Evidence map›Paper›PMID 25525268›Full record

ArticleThe Journal of biological chemistry2015

Bacteriophage SPP1 tail tube protein self-assembles into β-structure-rich tubes.

Chantal Langlois, Stéphanie Ramboarina, Abhishek Cukkemane, Isabelle Auzat, Benjamin Chagot, Bernard Gilquin, Athanasios Ignatiou, Isabelle Petitpas, Emmanouil Kasotakis, Maïté Paternostre and 5 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Article
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  4. Article
  5. Iranian journal of microbiology · 2020
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  6. Article
  7. Article
  8. Article
  9. Article
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  11. Protein-Protein Interfaces Probed by Methyl Labeling and Proton-Detected Solid-State NMR Spectroscopy.Chemphyschem : a European journal of chemical physics and physical chemistry · 2018
    Article
  12. Article
  13. Bacteriophage Tail-Tube Assembly Studied by Proton-Detected 4D Solid-State NMR.Angewandte Chemie (International ed. in English) · 2017
    Article
  14. Article
  15. Structural rearrangements in the phage head-to-tail interface during assembly and infection.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 7 institutions in 3 countries.

Chantal LangloisFrom the Laboratoire de Biologie Structurale et Radiobiologie, UMR CNRS 8221 and CEA IBITECS, Commissariat à l'Energie Atomique, Saclay 91191 Gif-sur-Yvette Cedex, France.
Stéphanie RamboarinaFrom the Laboratoire de Biologie Structurale et Radiobiologie, UMR CNRS 8221 and CEA IBITECS, Commissariat à l'Energie Atomique, Saclay 91191 Gif-sur-Yvette Cedex, France.
Abhishek Cukkemanethe NMR Spectroscopy Group, Bijvoet Center for Biomolecular Research, Department of Chemistry, Faculty of Science, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands, the Microbiology Department, Tuljaram Chaturchand College, Baramati-413102, India.
Isabelle Auzatthe Unité de Virologie Moléculaire et Structurale, CNRS UPR3296, Centre de Recherche de Gif, Bâtiment 14B, CNRS, 91198 Gif-sur-Yvette, France, and.
Benjamin ChagotFrom the Laboratoire de Biologie Structurale et Radiobiologie, UMR CNRS 8221 and CEA IBITECS, Commissariat à l'Energie Atomique, Saclay 91191 Gif-sur-Yvette Cedex, France.
Bernard GilquinFrom the Laboratoire de Biologie Structurale et Radiobiologie, UMR CNRS 8221 and CEA IBITECS, Commissariat à l'Energie Atomique, Saclay 91191 Gif-sur-Yvette Cedex, France.
Athanasios Ignatiouthe Institute of Structural and Molecular Biology, Birkbeck College, London WC1E 7HX, United Kingdom.
Isabelle Petitpasthe Unité de Virologie Moléculaire et Structurale, CNRS UPR3296, Centre de Recherche de Gif, Bâtiment 14B, CNRS, 91198 Gif-sur-Yvette, France, and.
Emmanouil KasotakisFrom the Laboratoire de Biologie Structurale et Radiobiologie, UMR CNRS 8221 and CEA IBITECS, Commissariat à l'Energie Atomique, Saclay 91191 Gif-sur-Yvette Cedex, France.
Maïté PaternostreFrom the Laboratoire de Biologie Structurale et Radiobiologie, UMR CNRS 8221 and CEA IBITECS, Commissariat à l'Energie Atomique, Saclay 91191 Gif-sur-Yvette Cedex, France.
Helen E Whitethe Institute of Structural and Molecular Biology, Birkbeck College, London WC1E 7HX, United Kingdom.
Elena V Orlovathe Institute of Structural and Molecular Biology, Birkbeck College, London WC1E 7HX, United Kingdom.
Marc Baldusthe NMR Spectroscopy Group, Bijvoet Center for Biomolecular Research, Department of Chemistry, Faculty of Science, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands.
Paulo Tavaresthe Unité de Virologie Moléculaire et Structurale, CNRS UPR3296, Centre de Recherche de Gif, Bâtiment 14B, CNRS, 91198 Gif-sur-Yvette, France, and.
Sophie Zinn-JustinFrom the Laboratoire de Biologie Structurale et Radiobiologie, UMR CNRS 8221 and CEA IBITECS, Commissariat à l'Energie Atomique, Saclay 91191 Gif-sur-Yvette Cedex, France, sophie.zinn@cea.fr.
Institut de Biologie et Technologies · FRCentre National de la Recherche Scientifique · FRInstitut de Biologie Structurale · FRInstitute of Structural and Molecular Biology · GBUtrecht University · NLBirkbeck, University of London · GBLaboratoire de Virologie Moléculaire et Structurale · FR

Funding

Biotechnology and Biological Sciences Research Council B17360Biotechnology and Biological Sciences Research Council BB/F012705/1
6 · The paper itself

Abstract

The majority of known bacteriophages have long tails that serve for bacterial target recognition and viral DNA delivery into the host. These structures form a tube from the viral capsid to the bacterial cell. The tube is formed primarily by a helical array of tail tube protein (TTP) subunits. In phages with a contractile tail, the TTP tube is surrounded by a sheath structure. Here, we report the first evidence that a phage TTP, gp17.1 of siphophage SPP1, self-assembles into long tubes in the absence of other viral proteins. gp17.1 does not exhibit a stable globular structure when monomeric in solution, even if it was confidently predicted to adopt the β-sandwich fold of phage λ TTP. However, Fourier transform infrared and nuclear magnetic resonance spectroscopy analyses showed that its β-sheet content increases significantly during tube assembly, suggesting that gp17.1 acquires a stable β-sandwich fold only after self-assembly. EM analyses revealed that the tube is formed by hexameric rings stacked helicoidally with the same organization and helical parameters found for the tail of SPP1 virions. These parameters were used to build a pseudo-atomic model of the TTP tube. The large loop spanning residues 40-56 is located on the inner surface of the tube, at the interface between adjacent monomers and hexamers. In line with our structural predictions, deletion of this loop hinders gp17.1 tube assembly in vitro and interferes with SPP1 tail assembly during phage particle morphogenesis in bacteria.

Indexed as

Protein FoldingAmino Acid SequenceBacteriophagesMolecular Sequence DataProtein Structure, TertiaryViral ProteinsViral ProteinsBacteriophageElectron MicroscopyFourier Transform IR (FTIR)Solid State NMRTail TubeTertiary StructureVirionVirus Assembly

Identifiers

PMID25525268
PMCPMC4319047
OpenAlexW2055191755

What OpenQuestion holds

Textmetadata
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.