Evidence map›Paper›PMID 25524427›Full record

ArticleProteins2015

Room temperature crystal structure of the fast switching M159T mutant of the fluorescent protein dronpa.

Marius Kaucikas, Ann Fitzpatrick, Elana Bryan, Abelone Struve, Robert Henning, Irina Kosheleva, Vukica Srajer, Gerrit Groenhof, Jasper J Van Thor

Abstract read
In one paragraph

Article in Proteins, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Marius KaucikasDivision of Molecular Biosciences, Imperial College London, London, SW7 2AZ, United Kingdom.
Ann Fitzpatrick
Elana Bryan
Abelone Struve
Robert Henning
Irina Kosheleva
Vukica Srajer
Gerrit Groenhof
Jasper J Van Thor

Funding

BioCARS: A Synchroton Structural Biology ResourceP41GM103543 · NIGMS · UNIVERSITY OF CHICAGO · PI MOFFAT, JOHN KEITH · 2012 to 2012
$1.1M
NIGMS NIH HHS P41 GM103543
6 · The paper itself

Abstract

The fluorescent protein Dronpa undergoes reversible photoswitching reactions between the bright "on" and dark "off" states via photoisomerization and proton transfer reactions. We report the room temperature crystal structure of the fast switching Met159Thr mutant of Dronpa at 2.0-Å resolution in the bright on state. Structural differences with the wild type include shifted backbone positions of strand β8 containing Thr159 as well as an altered A-C dimer interface involving strands β7, β8, β10, and β11. The Met159Thr mutation increases the cavity volume for the p-hydroxybenzylidene-imidazolinone chromophore as a result of both the side chain difference and the backbone positional differences.

Indexed as

AnimalsAnthozoaCrystallography, X-RayLuminescent ProteinsMolecular Dynamics SimulationMutationRecombinant ProteinsTemperatureLuminescent ProteinsRecombinant ProteinsDronpamolecular dynamicsreversibly photoswitchable fluorescent proteinroom temperatureX-ray structure

Identifiers

PMID25524427
PMCPMC4494737

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.