Evidence map›Paper›PMID 25523770›Full record

ArticleGenome announcements2014

Complete Genome Sequence of Bifidobacterium longum 105-A, a Strain with High Transformation Efficiency.

Yu Kanesaki, Hisayoshi Masutani, Mikiyasu Sakanaka, Yuh Shiwa, Takatomo Fujisawa, Yasukazu Nakamura, Atsushi Yokota, Satoru Fukiya, Tohru Suzuki, Hirofumi Yoshikawa

Open access · diamondAbstract read
In one paragraph

Article in Genome announcements, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.6field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 18 citations in OpenAlex.

  1. Development of an improved colonization system for human-derivedBioscience of microbiota, food and health · 2024
    Article
  2. Article
  3. Observational
  4. Article
  5. Recent Development of ProbioticFrontiers in bioengineering and biotechnology · 2021
    Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Yu KanesakiGenome Research Center, Tokyo University of Agriculture, Setagaya, Tokyo, Japan.
Hisayoshi MasutaniGraduate School of Applied Biological Sciences, Gifu University, Gifu, Gifu, Japan.
Mikiyasu SakanakaLaboratory of Microbial Physiology, Research Faculty of Agriculture, Hokkaido University, Sapporo, Hokkaido, Japan.
Yuh ShiwaGenome Research Center, Tokyo University of Agriculture, Setagaya, Tokyo, Japan.
Takatomo FujisawaCenter for Information Biology, National Institute of Genetics, Research Organization of Information and Systems, Mishima, Shizuoka, Japan.
Yasukazu NakamuraCenter for Information Biology, National Institute of Genetics, Research Organization of Information and Systems, Mishima, Shizuoka, Japan.
Atsushi YokotaLaboratory of Microbial Physiology, Research Faculty of Agriculture, Hokkaido University, Sapporo, Hokkaido, Japan.
Satoru FukiyaLaboratory of Microbial Physiology, Research Faculty of Agriculture, Hokkaido University, Sapporo, Hokkaido, Japan s-fukiya@chem.agr.hokudai.ac.jp suzuki@gifu-u.ac.jp.
Tohru Suzukithe United Graduate School of Agricultural Science, Gifu University, Gifu, Gifu, Japan.
Hirofumi Yoshikawa
Hokkaido University · JPTokyo University of Agriculture · JPGifu University · JPNational Institute of Genetics · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bifidobacterium longum 105-A shows high transformation efficiency and allows for the generation of gene knockout mutants through homologous recombination. Here, we report the complete genome sequence of strain 105-A. Genes encoding at least four putative restriction-modification systems were found in this genome, which might contribute to its transformation efficiency.

Identifiers

PMID25523770
PMCPMC4271160
OpenAlexW2160997238

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.