Evidence map›Paper›PMID 25522243›Full record

ArticleJournal of the American Chemical Society2015

Ligand-receptor interaction catalyzes the aggregation of small molecules to induce cell necroptosis.

Junfeng Shi, Xuewen Du, Yibing Huang, Jie Zhou, Dan Yuan, Dongdong Wu, Ye Zhang, Richard Haburcak, Irving R Epstein, Bing Xu

Abstract read
In one paragraph

Article in Journal of the American Chemical Society, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
3.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 48 citations in OpenAlex.

  1. Article
  2. Article
  3. Instructed-Assembly (iA): A Molecular Process for Controlling Cell Fate.Bulletin of the Chemical Society of Japan · 2018
    Article
  4. Review
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  6. Review
  7. Article
  8. Article
  9. Heterotypic Supramolecular Hydrogels.Journal of materials chemistry. B · 2016
    Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Junfeng ShiDepartment of Chemistry, Brandeis University , 415 South Street, MS 015, Waltham, Massachusetts 02453, United States.
Xuewen Du
Yibing Huang
Jie Zhou
Dan Yuan
Dongdong Wu
Ye Zhang
Richard Haburcak
Irving R Epstein
Bing Xu
Brandeis University · US

Funding

Subcellular Enzyme-instructed self-assembly for molecular anticancer nanomedicinesR01CA142746 · NCI · BRANDEIS UNIVERSITY · PI Bing Xu · 2010 to 2026
$6.4M
Howard Hughes Medical InstituteNCI NIH HHS R01 CA142746NCI NIH HHS R01CA142746
6 · The paper itself

Abstract

Because they exhibit important biological functions, from unfolding proteins to activating enzymes to controlling cell fates, aggregates of small molecules are able to serve as functional molecular entities in cellular environments. However, the inability to precisely control their production has hampered the understanding and exploration of their biological functions. Here we show that the well-established ligand-receptor interaction between vancomycin and d-Ala-d-Ala catalyzes the aggregation of a d-Ala-d-Ala-containing small peptide derivative in water. The resulting aggregates largely adhere to the cell surface to induce cell necroptosis. Mutation of d-Ala-d-Ala to l-Ala-l-Ala or removal of the aromatic group in the derivative results in innocuous compounds, confirming that the aromatic-aromatic and ligand-receptor interactions are responsible for the formation and corresponding cytotoxicity of the aggregates. In addition to being the first example of ligand-receptor interaction-catalyzed aggregation of small molecules on the surface of mammalian cells, this work provides useful insights for understanding the cytotoxicity of molecular aggregates of small molecules.

Indexed as

ApoptosisNecrosisBiocatalysisCell AdhesionCell SurvivalDipeptidesDose-Response Relationship, DrugHeLa CellsHumansLigandsMolecular ConformationPeptidesProtein AggregatesStructure-Activity RelationshipSurface PropertiesVancomycinalanylalanineDipeptidesLigandsPeptidesProtein AggregatesVancomycinWater

Identifiers

PMID25522243
PMCPMC4295010
OpenAlexW2049007947

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.