Evidence map›Paper›PMID 25522166›Full record

ArticleInternational journal of molecular sciences2014

Comparative transcriptome analysis to reveal genes involved in wheat hybrid necrosis.

Yong Zhang, Yan Cheng, Jiahui Guo, Ennian Yang, Cheng Liu, Xuelian Zheng, Kejun Deng, Jianping Zhou

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in International journal of molecular sciences, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.4field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. A CC-NBS-LRR gene induces hybrid lethality in cotton.Journal of experimental botany · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Yong ZhangSchool of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu 610054, China. zhangyong916@uestc.edu.cn.
Yan ChengSchool of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu 610054, China. cy505518162@163.com.
Jiahui GuoSchool of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu 610054, China. guojiahui@uestc.edu.cn.
Ennian YangCrop Research Institute, Sichuan Academy of Agricultural Sciences, Chengdu 610066, China. yangennian@126.com.
Cheng LiuCrop Research Institute, Shandong Academy of Agricultural Sciences, Ji'nan 250100, China. liucheng@uestc.edu.cn.
Xuelian ZhengSchool of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu 610054, China. zhengxl@uestc.edu.cn.
Kejun DengSchool of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu 610054, China. dengkj@uestc.edu.cn.
Jianping ZhouSchool of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu 610054, China. zhoujp@uestc.edu.cn.
University of Electronic Science and Technology of China · CNShandong Academy of Agricultural Sciences · CNSichuan Academy of Agricultural Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Wheat hybrid necrosis is an interesting genetic phenomenon that is found frequently and results in gradual death or loss of productivity of wheat. However, the molecular basis and mechanisms of this genetic phenomenon are still not well understood. In this study, the transcriptomes of wheat hybrid necrosis F1 and its parents (Neimai 8 and II469) were investigated using digital gene expression (DGE). A total of 1300 differentially expressed genes were identified, indicating that the response to hybrid necrosis in wheat is complicated. The assignments of the annotated genes based on Gene Ontology (GO) revealed that most of the up-regulated genes belong to "universal stress related", "DNA/RNA binding", "protein degradation" functional groups, while the down-regulated genes belong to "carbohydrate metabolism" and "translation regulation" functional groups. These findings suggest that these pathways were affected by hybrid necrosis. Our results provide preliminarily new insight into the underlying molecular mechanisms of hybrid necrosis and will help to identify important candidate genes involved in wheat hybrid necrosis.

Indexed as

ChimeraGene Expression ProfilingGenes, PlantTranscriptomeComputational BiologyGene Expression Regulation, PlantHigh-Throughput Nucleotide SequencingMolecular Sequence AnnotationNecrosisPhenotypeReproducibility of ResultsTriticum

Identifiers

PMID25522166
PMCPMC4284769
OpenAlexW2093013726

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.