Evidence map›Paper›PMID 25521228›Full record

ArticleGenes and immunity2015

Polymorphisms in TICAM2 and IL1B are associated with TB.

Noémi Borsay Hall, Robert P Igo, LaShaunda L Malone, Barbara Truitt, Audrey Schnell, Li Tao, Brenda Okware, Mary Nsereko, Keith Chervenak, Christina Lancioni and 6 more

Open access · greenAbstract read
In one paragraph

Article in Genes and immunity, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed, 1 pooled it
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 1 synthesis or guideline pooled it, 61 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Article
  4. Review
  5. Review
  6. Review
  7. Review
  8. Review
  9. Article
  10. Article
  11. Mice Dually Disrupted forFrontiers in immunology · 2022
    Article
  12. Article
  13. Review
  14. Inflammasome genetics and complex diseases: a comprehensive review.European journal of human genetics : EJHG · 2020
    Review
  15. Genetics and evolution of tuberculosis pathogenesis: New perspectives and approaches.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2020
    Review
  16. Towards new TB vaccines.Seminars in immunopathology · 2020
    Review
  17. Article
  18. Article
  19. Long-term Stability of Resistance to Latent Mycobacterium tuberculosis Infection in Highly Exposed Tuberculosis Household Contacts in Kampala, Uganda.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2019
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 4 institutions in 2 countries.

Noémi Borsay Hall *Dept. of Epidemiology & Biostatistics, Case Western Reserve Univ., Cleveland, OH.
Robert P Igo *Dept. of Epidemiology & Biostatistics, Case Western Reserve Univ., Cleveland, OH.
LaShaunda L MaloneUganda-CWRU Research Collaboration.
Barbara TruittDept. of Epidemiology & Biostatistics, Case Western Reserve Univ., Cleveland, OH.
Audrey SchnellDept. of Epidemiology & Biostatistics, Case Western Reserve Univ., Cleveland, OH.
Li TaoDept. of Medicine, Case Western Reserve Univ., Cleveland, OH.
Brenda OkwareUganda-CWRU Research Collaboration.
Mary NserekoUganda-CWRU Research Collaboration.
Keith ChervenakDept. of Medicine, Case Western Reserve Univ., Cleveland, OH.
Christina LancioniDept. of Pediatrics, Oregon Health & Science University, Portland, OR.
Thomas R HawnDept. of Medicine, Univ. of Washington School of Medicine, Seattle, WA.
Harriet Mayanja-KizzaUganda-CWRU Research Collaboration.
Moses L JolobaUganda-CWRU Research Collaboration.
W Henry BoomDept. of Medicine, Case Western Reserve Univ., Cleveland, OH.
Catherine M SteinDept. of Epidemiology & Biostatistics, Case Western Reserve Univ., Cleveland, OH.
Tuberculosis Research Unit (TBRU)
Case Western Reserve University · USInfectious Diseases Research Collaboration · UGOregon Health & Science University · USUniversity of Washington · US

Funding

BIOMETRIC-GENETIC ANALYSIS OF CARDIOVASCULAR DISEASET32HL007567 · NHLBI · LOUISIANA STATE UNIV HSC NEW ORLEANS · PI ZHU, XIAOFENG · 1985 to 2021
$6.0M
Tuberculosis Prevention Research Unit /TBRU/-266095383N01AI095383 · NIAID · CASE WESTERN RESERVE UNIVERSITY · 2000 to 2005
$5.6M
Proteogenomics of dysregulated protein interaction networks in MTB infectionR01HL106798 · NHLBI · CASE WESTERN RESERVE UNIVERSITY · PI BOOM, W. HENRY, CHANCE, MARK R · 2010 to 2013
$2.8M
Pathway analysis of tuberculosis pathogenesisR01HL096811 · NHLBI · CASE WESTERN RESERVE UNIVERSITY · PI STEIN, CATHERINE MARIE · 2009 to 2013
$2.2M
MTB directly regulates human CD4+ T cell activationK08AI083739 · NIAID · OREGON HEALTH & SCIENCE UNIVERSITY · PI LANCIONI, CHRISTINA LOUISE · 2009 to 2013
$637k
NHLBI NIH HHS R01 HL096811NHLBI NIH HHS R01HL096811NHLBI NIH HHS R01HL10566113NHLBI NIH HHS R01 HL106798NHLBI NIH HHS T32 HL007567NHLBI NIH HHS T32HL007567NIAID NIH HHS K08 AI083739NIAID NIH HHS K08AI083739NIAID NIH HHS N01 AI070022NIAID NIH HHS N01 AI095383NIAID NIH HHS N01-AI70022NIAID NIH HHS N01-AI95383PHS HHS HHSN266200700022C
6 · The paper itself

Abstract

Human genetic susceptibility for tuberculosis (TB) has been demonstrated by several studies, but few have examined the multiple innate and adaptive immunity genes comprehensively, age-specific effects and/or resistance to Mycobacterium tuberculosis (Mtb) infection (resistors (RSTRs)). We hypothesized that RSTRs, defined by a persistently negative tuberculin skin test, may have different genetic influences than Mtb disease. We examined 29 candidate genes in pathways that mediate immune responses to Mtb in subjects in a household contact study in Kampala, Uganda. We genotyped 546 haplotype-tagging single-nucleotide polymorphisms (SNPs) in 835 individuals from 481 families; 28.7% had TB, 10.5% were RSTRs, and the remaining 60.8% had latent Mtb infection. Among our most significant findings were SNPs in TICAM2 (P = 3.6 × 10(-6)) and IL1B (P = 4.3 × 10(-5)) associated with TB. Multiple SNPs in IL4 and TOLLIP were associated with TB (P < 0.05). Age-genotype interaction analysis revealed SNPs in IL18 and TLR6 that were suggestively associated with TB in children aged ⩽ 10 years (P = 2.9 × 10(-3)). By contrast, RSTR was associated with SNPs in NOD2, SLC6A3 and TLR4 (nominal P < 0.05); these genes were not associated with TB, suggesting distinct genetic influences. We report the first association between TICAM2 polymorphisms and TB and between IL18 and pediatric TB.

Indexed as

Adaptor Proteins, Signal TransducingAdolescentAdultChildChild, PreschoolFemaleGenetic Predisposition to DiseaseHaplotypesHumansInterleukin-1betaMalePolymorphism, Single NucleotideTuberculosisUgandaYoung AdultAdaptor Proteins, Signal TransducingIL1B protein, humanInterleukin-1betaTICAM2 protein, human

Identifiers

PMID25521228
PMCPMC4352113
OpenAlexW2046498617

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.