Evidence map›Paper›PMID 25521226›Full record

ArticleGenes and immunity

Genome-wide significant linkage to IgG subclass responses against Plasmodium falciparum antigens on chromosomes 8p22-p21, 9q34 and 20q13.

A Brisebarre, B Kumulungui, S Sawadogo, S Afridi, F Fumoux, P Rihet

Abstract read
PubMed Publisher
In one paragraph

Article in Genes and immunity. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.4field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 4 citations in OpenAlex.

  1. Forward Genetics in Apicomplexa Biology: The Host Side of the Story.Frontiers in cellular and infection microbiology · 2022
    Review
  2. Frontiers in immunology · 2017
    Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 5 institutions in 4 countries.

A Brisebarre1] INSERM, UMR1090 TAGC, Marseille, France [2] Aix-Marseille Université, Marseille, France.
B KumulunguiUniversité des Sciences et Techniques de Masuku, Institut National Supérieur d'Agronomie et de Biotechnologies, Franceville, Gabon.
S SawadogoUniversity of Ouagadougou, UFR des Sciences de la Santé, Ouagadougou, Burkina Faso.
S Afridi1] INSERM, UMR1090 TAGC, Marseille, France [2] Aix-Marseille Université, Marseille, France.
F Fumoux1] Aix-Marseille Université, Marseille, France [2] UMR-MD3, Marseille, France.
P Rihet1] INSERM, UMR1090 TAGC, Marseille, France [2] Aix-Marseille Université, Marseille, France.
Theories and Approaches of Genomic Complexity · FRAix-Marseille Université · FRBalochistan University of Information Technology, Engineering and Management Sciences · PKUniversité des Sciences et Techniques de Masuku · GAUniversité Joseph Ki-Zerbo · BF

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A genome-wide scan was conducted for the levels of total immunoglobulin G (IgG) and IgG subclasses directed against Plasmodium falciparum antigens in an urban population living in Burkina Faso. Non-parametric multipoint linkage analysis provided three chromosomal regions with genome-wide significant evidence (logarithm of the odds (LOD) score >3.6), and five chromosomal regions with genome-wide suggestive evidence (LOD score >2.2). IgG3 levels were significantly linked to chromosomes 8p22-p21 and 20q13, whereas IgG4 levels were significantly linked to chromosome 9q34. In addition, we detected suggestive linkage of IgG1 levels to chromosomes 18p11-q12 and 18q12-q21, IgG4 levels to chromosomes 1p31 and 12q24 and IgG levels to chromosome 6p24-p21. Moreover, we genotyped genetic markers located within the regions of interest in a rural population living in Burkina Faso. We detected genome-wide significant and suggestive linkage results when combining the two study populations for chromosomes 1p31, 6p24-p21, 8p22-p21, 9q34, 12q24 and 20q13. Because high anti-parasite IgG3 and low anti-parasite IgG4 levels were associated with malaria resistance, the chromosomal regions linked to IgG3 and IgG4 levels are of special interest. Although the results should be confirmed in an independent population, they may provide new insights in understanding both the genetic control of IgG production and malaria resistance.

Indexed as

Chromosomes, HumanAdolescentAdultAntigens, ProtozoanBurkina FasoChildChild, PreschoolChromosome MappingChromosomes, Human, Pair 20Chromosomes, Human, Pair 8Chromosomes, Human, Pair 9Genetic LinkageGenome-Wide Association StudyHumansImmunoglobulin GInfantAntigens, ProtozoanImmunoglobulin G

Identifiers

PMID25521226
OpenAlexW2081271040

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.