Evidence map›Paper›PMID 25521223›Full record

ArticleBrain pathology (Zurich, Switzerland)2015

Pilomyxoid Astrocytoma (PMA) Shows Significant Differences in Gene Expression vs. Pilocytic Astrocytoma (PA) and Variable Tendency Toward Maturation to PA.

Bette K Kleinschmidt-DeMasters, Andrew M Donson, Hannes Vogel, Nicholas K Foreman

Open access · greenAbstract read
In one paragraph

Article in Brain pathology (Zurich, Switzerland), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. m6A modification in RNA: biogenesis, functions and roles in gliomas.Journal of experimental & clinical cancer research : CR · 2020
    Review
  6. Article
  7. Review
  8. Article
  9. Review
  10. Article
  11. Integrating RNA sequencing into neuro-oncology practice.Translational research : the journal of laboratory and clinical medicine · 2017
    Review
  12. Characterization of gliomas: from morphology to molecules.Virchows Archiv : an international journal of pathology · 2017
    Review
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Bette K Kleinschmidt-DeMastersDepartment of Pathology, The University of Colorado School of Medicine, Aurora, CO.
Andrew M DonsonDepartment of Pediatrics, The University of Colorado School of Medicine, Aurora, CO.
Hannes VogelDepartment of Pathology, Stanford University, Palo Alto, CA.
Nicholas K ForemanDepartment of Neurosurgery, The University of Colorado School of Medicine, Aurora, CO.
University of Colorado Denver · USChildren's Hospital Colorado · USPalo Alto University · US

Funding

University of Colorado Cancer Center Support Grant - Lung Cancer Patient-Derived Xenografts with Autologous Human Immune SystemsP30CA046934 · NCI · UNIVERSITY OF COLORADO DENVER · PI James V Degregori · 1988 to 2026
$117.0M
NCI NIH HHS P30 CA046934NCI NIH HHS P30CA046934
6 · The paper itself

Abstract

Pilomyxoid astrocytomas (PMAs) manifest a more aggressive clinical course than pilocytic astrocytomas (PAs). Development of effective therapies demands a better biological understanding of PMA. We first conducted gene expression microarray analysis of 9 PMA and 13 PA from infra- and supratentorial sites. Unsupervised hierarchical clustering analysis demonstrated that tumors are grouped according to anatomic site, not diagnosis. Gene expression profiles were then contrasted between eight PMAs and six PAs, all supratentorial/hypothalamic/chiasmal. Clinical outcome of PMAs varied, with four out of four patients with diencephalic syndrome succumbing to disease, one of whom showed bulky metastatic leptomeningeal spread at autopsy, with bimodal maturation to PA in some areas and de-differentiation to glioblastoma in others. A surviving child has undergone multiple surgical debulking, with progressive maturation to PA over time. Ontology-enrichment analysis identified overexpression in PMAs of extracellular matrix and mitosis-related genes. Genes overexpressed in PMA vs. PA, ranked according to fold-change, included developmental genes H19, DACT2, extracellular matrix collagens (COL2A1; COL1A1) and IGF2BP3 (IMP3), the latter previously identified as an adverse prognostic factor in PMA and PA.

Indexed as

Gene ExpressionAdolescentAstrocytomaBrain NeoplasmsChildChild, PreschoolCohort StudiesFemaleGene Expression ProfilingGene OntologyHumansInfantMaleMutationOligonucleotide Array Sequence AnalysisPilomatrixomaBRAF protein, humanIGF2BP3 protein, humanProto-Oncogene Proteins B-rafRNA-Binding ProteinsglioblastomaIMP3maturationmicroarraypilomyxoid astrocytoma

Identifiers

PMID25521223
PMCPMC4470883
OpenAlexW2137791840

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.