ArticleFrontiers in plant science2014
Elucidation of the molecular responses to waterlogging in Jatropha roots by transcriptome profiling.
Article in Frontiers in plant science, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.
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Who cites it
28 citing papers in PubMed, 70 citations in OpenAlex.
- Review
- Uncovering waterlogging-responsive genes in cucumber through machine learning and differential gene correlation analysis.Botanical studies · 2024Article
- Transcriptomic, Physiological, and Metabolomic Response of an Alpine Plant,International journal of molecular sciences · 2023Article
- Genome-wide analysis of R2R3-MYB genes in cultivated peanut (Frontiers in plant science · 2023Article
- Genome-Wide Identification and Expression Analysis of Cytokinin Response Regulator (RR) Genes in the Woody PlantInternational journal of molecular sciences · 2022Article
- RNA-Seq Reveals Waterlogging-Triggered Root Plasticity in Mungbean Associated with Ethylene and Jasmonic Acid Signal Integrators for Root Regeneration.Plants (Basel, Switzerland) · 2022Article
- Ultrastructure, adaptability, and alleviation mechanisms of photosynthetic apparatus in plants under waterlogging: A review.Photosynthetica · 2022Article
- PacBio full-length sequencing integrated with RNA-seq reveals the molecular mechanism of waterlogging and its recovery inFrontiers in plant science · 2022Article
- Article
- Genome-wide identification and analysis of WRKY gene family in maize provide insights into regulatory network in response to abiotic stresses.BMC plant biology · 2021Article
- Overexpression ofPlants (Basel, Switzerland) · 2020Article
- Transcriptome analysis on responses of orchardgrass (Dactylis glomerata L.) leaves to a short term flooding.Hereditas · 2020Article
- JCDB: a comprehensive knowledge base for Jatropha curcas, an emerging model for woody energy plants.BMC genomics · 2019Article
- Comparative Transcriptome Analysis of Waterlogging-Sensitive and Tolerant Zombi Pea (Plants (Basel, Switzerland) · 2019Article
- Submergence and Waterlogging Stress in Plants: A Review Highlighting Research Opportunities and Understudied Aspects.Frontiers in plant science · 2019Review
- Comparative Transcriptome Analysis of Waterlogging-Sensitive and Waterlogging-Tolerant Chrysanthemum morifolium Cultivars under Waterlogging Stress and Reoxygenation Conditions.International journal of molecular sciences · 2018Article
- Article
- De novo transcriptome analysis and gene expression profiling of an oleaginous microalga Scenedesmus acutus TISTR8540 during nitrogen deprivation-induced lipid accumulation.Scientific reports · 2018Article
- Genome-wide comparative analysis of papain-like cysteine protease family genes in castor bean and physic nut.Scientific reports · 2018Article
- Molecular insights into photosynthesis and carbohydrate metabolism in Jatropha curcas grown under elevated COScientific reports · 2017Article
Corrections and comments
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Authors and funding
8 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Jatropha (Jatropha curcas) is a promising oil-seed crop for biodiesel production. However, the species is highly sensitive to waterlogging, which can result in stunted growth and yield loss. To date, the molecular mechanisms underlying the responses to waterlogging in Jatropha remain elusive. Here, the transcriptome adjustment of Jatropha roots to waterlogging was examined by high-throughput RNA-sequencing (RNA-seq). The results indicated that 24 h of waterlogging caused significant changes in mRNA abundance of 1968 genes. Comprehensive gene ontology and functional enrichment analysis of root transcriptome revealed that waterlogging promoted responses to hypoxia and anaerobic respiration. On the other hand, the stress inhibited carbohydrate synthesis, cell wall biogenesis, and growth. The results also highlighted the roles of ethylene, nitrate, and nitric oxide in waterlogging acclimation. In addition, transcriptome profiling identified 85 waterlogging-induced transcription factors including members of AP2/ERF, MYB, and WRKY families implying that reprogramming of gene expression is a vital mechanism for waterlogging acclimation. Comparative analysis of differentially regulated transcripts in response to waterlogging among Arabidopsis, gray poplar, Jatropha, and rice further revealed not only conserved but species-specific regulation. Our findings unraveled the molecular responses to waterlogging in Jatropha and provided new perspectives for developing a waterlogging tolerant cultivar in the future.
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