Evidence map›Paper›PMID 25519983›Full record

ArticleVirology journal2014

Clearly different mechanisms of enhancement of short-lived Nef-mediated viral infectivity between SIV and HIV-1.

Keisuke Harada, Nobutoki Takamune, Shozo Shoji, Shogo Misumi

Open access · goldAbstract read
In one paragraph

Article in Virology journal, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact, top 89% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 0 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Keisuke HaradaDepartment of Pharmaceutical Biochemistry, Faculty of Life Sciences, Kumamoto University, 5-1Oe-Honmachi, Chuo-ku, Kumamoto, 8620973, Japan. tetsukuroe@gmail.com.
Nobutoki TakamuneDepartment of Pharmaceutical Biochemistry, Faculty of Life Sciences, Kumamoto University, 5-1Oe-Honmachi, Chuo-ku, Kumamoto, 8620973, Japan. tkmnnbtk@gpo.kumamoto-u.ac.jp.
Shozo ShojiDepartment of Pharmaceutical Biochemistry, Faculty of Life Sciences, Kumamoto University, 5-1Oe-Honmachi, Chuo-ku, Kumamoto, 8620973, Japan. shoji@gpo.kumamoto-u.ac.jp.
Shogo MisumiDepartment of Pharmaceutical Biochemistry, Faculty of Life Sciences, Kumamoto University, 5-1Oe-Honmachi, Chuo-ku, Kumamoto, 8620973, Japan. misumi@gpo.kumamoto-u.ac.jp.
Kumamoto University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundOne of the major functions of Nef is in the enhancement of the infectivity of the human and simian immunodeficiency viruses (HIV and SIV, respectively). However, the detailed mechanism of the enhancement of viral infectivity by Nef remains unclear. Additionally, studies of mechanisms by which Nef enhances the infectivity of SIV are not as intensive as those of HIV-1.

methodsWe generated short-lived Nef constructed by fusing Nef to a proteasome-mediated protein degradation sequence to characterize the Nef role in viral infectivity.

resultsThe apparent expression level of the short-lived Nef was found to be extremely lower than that of the wild-type Nef. Moreover, the expression level of the short-lived Nef increased with the treatment with a proteasome inhibitor. The infectivity of HIV-1 with the short-lived Nef was significantly lower than that with the wild-type Nef. On the other hand, the short-lived Nef enhanced the infectivity of SIVmac239, an ability observed to be interestingly equivalent to that of the wild-type Nef. The short-lived Nef was not detected in SIVmac239, but the wild-type Nef was, suggesting that the incorporation of Nef into SIVmac239 is not important for the enhancement of SIVmac239 infectivity.

conclusionsAltogether, the findings suggest that the mechanisms of infectivity enhancement by Nef are different between HIV-1 and SIVmac239. Lastly, we propose the following hypothesis: even when the expression level of a protein is extremely low, the protein may still be sufficiently functional.

Indexed as

HIV-1Humansnef Gene Products, Human Immunodeficiency VirusSimian Immunodeficiency VirusViral Regulatory and Accessory ProteinsVirulencenef Gene Products, Human Immunodeficiency VirusNEF protein, SIVViral Regulatory and Accessory Proteins

Identifiers

PMID25519983
PMCPMC4310179
OpenAlexW2100287768

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.