Evidence map›Paper›PMID 25519916›Full record

ArticleScientific reports2014

The EHEC-host interactome reveals novel targets for the translocated intimin receptor.

Sonja Blasche, Stefan Arens, Arnaud Ceol, Gabriella Siszler, M Alexander Schmidt, Roman Häuser, Frank Schwarz, Stefan Wuchty, Patrick Aloy, Peter Uetz and 2 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
2.9field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 37 citations in OpenAlex.

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  7. Tubulin Folding Cofactor TBCB is a Target of theInternational journal of molecular sciences · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 7 institutions in 4 countries.

Sonja BlascheGenomics and Proteomics Core Facilities, German Cancer Research Center, Im Neuenheimer Feld 580, 69120 Heidelberg, Germany.
Stefan ArensInstitute of Molecular Cell Biology, University of Münster, Schlossplatz 5, D-48149 Münster.
Arnaud Ceol1] Joint IRB-BSC Program in Computational Biology, Institute for Research in Biomedicine (IRB Barcelona), Barcelona, Spain [2] Center for Genomic Science of IIT@SEMM, Fondazione Istituto Italiano di Tecnologia (IIT), Via Adamello 16, 20139 Milan - Italy.
Gabriella SiszlerGenomics and Proteomics Core Facilities, German Cancer Research Center, Im Neuenheimer Feld 580, 69120 Heidelberg, Germany.
M Alexander SchmidtInstitute of Infectiology, ZMBE, University of Münster, Von-Esmarch-Str. 56, D-48149 Münster.
Roman HäuserGenomics and Proteomics Core Facilities, German Cancer Research Center, Im Neuenheimer Feld 580, 69120 Heidelberg, Germany.
Frank SchwarzGenomics and Proteomics Core Facilities, German Cancer Research Center, Im Neuenheimer Feld 580, 69120 Heidelberg, Germany.
Stefan Wuchty1] Dept. of Computer Science, Univ. of Miami, 1365 Memorial Drive, Coral Gables, FL 33146, USA [2] Center for Computational Science, Univ. of Miami, 1365 Memorial Drive, Coral Gables, FL 33146, USA.
Patrick Aloy1] Joint IRB-BSC Program in Computational Biology, Institute for Research in Biomedicine (IRB Barcelona), Barcelona, Spain [2] Institució Catalana de Recerca i Estudis Avançats (ICREA), Barcelona, Spain.
Peter UetzCenter for the Study of Biological Complexity, Virginia Commonwealth University, Richmond, VA 23284, USA.
Theresia Stradal1] Institute of Molecular Cell Biology, University of Münster, Schlossplatz 5, D-48149 Münster [2] Helmholtz Centre for Infection Research, Inhoffenstrasse 7, D-38124 Braunschweig.
Manfred KoeglGenomics and Proteomics Core Facilities, German Cancer Research Center, Im Neuenheimer Feld 580, 69120 Heidelberg, Germany.
German Cancer Research Center · DEUniversity of Münster · DEBoehringer Ingelheim (Germany) · DECenter for Genomic Science · ITInstitució Catalana de Recerca i Estudis Avançats · ESUniversity of Miami · USVirginia Commonwealth University · US

Funding

A Multi-'omic Analysis of the Vaginal Microbiome during PregnancyU54HD080784 · NICHD · VIRGINIA COMMONWEALTH UNIVERSITY · PI BUCK, GREGORY ALLEN, JEFFERSON, KIMBERLY KAY · 2014 to 2015
$8.2M
NICHD NIH HHS 8U54HD080784
6 · The paper itself

Abstract

Enterohemorrhagic E. coli (EHEC) manipulate their human host through at least 39 effector proteins which hijack host processes through direct protein-protein interactions (PPIs). To identify their protein targets in the host cells, we performed yeast two-hybrid screens, allowing us to find 48 high-confidence protein-protein interactions between 15 EHEC effectors and 47 human host proteins. In comparison to other bacteria and viruses we found that EHEC effectors bind more frequently to hub proteins as well as to proteins that participate in a higher number of protein complexes. The data set includes six new interactions that involve the translocated intimin receptor (TIR), namely HPCAL1, HPCAL4, NCALD, ARRB1, PDE6D, and STK16. We compared these TIR interactions in EHEC and enteropathogenic E. coli (EPEC) and found that five interactions were conserved. Notably, the conserved interactions included those of serine/threonine kinase 16 (STK16), hippocalcin-like 1 (HPCAL1) as well as neurocalcin-delta (NCALD). These proteins co-localize with the infection sites of EPEC. Furthermore, our results suggest putative functions of poorly characterized effectors (EspJ, EspY1). In particular, we observed that EspJ is connected to the microtubule system while EspY1 appears to be involved in apoptosis/cell cycle regulation.

Indexed as

Adhesins, BacterialEnterohemorrhagic Escherichia coliEscherichia coli ProteinsHost-Pathogen InteractionsHumansNeurocalcinProtein Interaction Domains and MotifsProtein Serine-Threonine KinasesReceptors, Cell SurfaceTranscription FactorsAdhesins, BacterialeaeA protein, E coliEscherichia coli ProteinsEspJ protein, E coliHPCAL1 protein, humanNCALD protein, humanNeurocalcinProtein Serine-Threonine KinasesReceptors, Cell SurfaceSTK16 protein, humanTir protein, E coliTranscription Factors

Identifiers

PMID25519916
PMCPMC4269881
OpenAlexW2029249163

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.