Evidence map›Paper›PMID 25519903›Full record

ArticleThe Journal of biological chemistry2015

HTRA1 (high temperature requirement A serine peptidase 1) gene is transcriptionally regulated by insertion/deletion nucleotides located at the 3' end of the ARMS2 (age-related maculopathy susceptibility 2) gene in patients with age-related macular degeneration.

Daisuke Iejima, Takeshi Itabashi, Yuich Kawamura, Toru Noda, Shinsuke Yuasa, Keiichi Fukuda, Chio Oka, Takeshi Iwata

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. An Association between HTRA1 and TGF-βJournal of clinical medicine · 2024
    Article
  5. Review
  6. CRISPR editing demonstrates rs10490924 raised oxidative stress in iPSC-derived retinal cells from patients withProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  7. Article
  8. Current Views on Chr10q26 Contribution to Age-Related Macular Degeneration.Advances in experimental medicine and biology · 2023
    Review
  9. Review
  10. Small Vessel Disease: Ancient Description, Novel Biomarkers.International journal of molecular sciences · 2022
    Review
  11. Review
  12. Review
  13. Associations ofClinical ophthalmology (Auckland, N.Z.) · 2021
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Daisuke IejimaFrom the Division of Molecular and Cellular Biology, National Institute of Sensory Organs, and.
Takeshi ItabashiFrom the Division of Molecular and Cellular Biology, National Institute of Sensory Organs, and.
Yuich KawamuraFrom the Division of Molecular and Cellular Biology, National Institute of Sensory Organs, and.
Toru Nodathe Division of Ophthalmology, National Hospital Organization Tokyo Medical Center, Tokyo 152-8902, Japan.
Shinsuke Yuasathe Department of Cardiology, Keio University School of Medicine, Tokyo 160-8582, Japan, and.
Keiichi Fukudathe Department of Cardiology, Keio University School of Medicine, Tokyo 160-8582, Japan, and.
Chio Okathe Division of Gene Function in Animals, Nara Institute of Science and Technology, Nara 630-0101, Japan.
Takeshi IwataFrom the Division of Molecular and Cellular Biology, National Institute of Sensory Organs, and takeshi_iwata@kankakuki.go.jp.
Tokyo Medical Center · JPKeio University · JPNara Institute of Science and Technology · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Dry age-related macular degeneration (AMD) accounts for over 85% of AMD cases in the United States, whereas Japanese AMD patients predominantly progress to wet AMD or polypoidal choroidal vasculopathy. Recent genome-wide association studies have revealed a strong association between AMD and an insertion/deletion sequence between the ARMS2 (age-related maculopathy susceptibility 2) and HTRA1 (high temperature requirement A serine peptidase 1) genes. Transcription regulator activity was localized in mouse retinas using heterozygous HtrA1 knock-out mice in which HtrA1 exon 1 was replaced with β-galactosidase cDNA, thereby resulting in dominant expression of the photoreceptors. The insertion/deletion sequence significantly induced HTRA1 transcription regulator activity in photoreceptor cell lines but not in retinal pigmented epithelium or other cell types. A deletion construct of the HTRA1 regulatory region indicated that potential transcriptional suppressors and activators surround the insertion/deletion sequence. Ten double-stranded DNA probes for this region were designed, three of which interacted with nuclear extracts from 661W cells in EMSA. Liquid chromatography-mass spectrometry (LC-MS/MS) of these EMSA bands subsequently identified a protein that bound the insertion/deletion sequence, LYRIC (lysine-rich CEACAM1 co-isolated) protein. In addition, induced pluripotent stem cells from wet AMD patients carrying the insertion/deletion sequence showed significant up-regulation of the HTRA1 transcript compared with controls. These data suggest that the insertion/deletion sequence alters the suppressor and activator cis-elements of HTRA1 and triggers sustained up-regulation of HTRA1. These results are consistent with a transgenic mouse model that ubiquitously overexpresses HtrA1 and exhibits characteristics similar to those of wet AMD patients.

Indexed as

AgedAnimalsBlotting, WesternCell LineChromatography, LiquidElectrophoretic Mobility Shift AssayFemaleHigh-Temperature Requirement A Serine Peptidase 1HumansImmunohistochemistryInduced Pluripotent Stem CellsIn Situ HybridizationMaleMiceMice, KnockoutMutationARMS2 protein, humanHigh-Temperature Requirement A Serine Peptidase 1HTRA1 protein, humanProteinsSerine EndopeptidasesAge-related Macular DegenerationARMS2DNA-binding ProteinEMSAHTRA1PhotoreceptorRetinaRetinal DegenerationTranscription Regulation

Identifiers

PMID25519903
PMCPMC4317043
OpenAlexW2035067779

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.