Evidence map›Paper›PMID 25519881›Full record

ArticleBMC biochemistry2014

Protein expression, characterization and activity comparisons of wild type and mutant DUSP5 proteins.

Jaladhi Nayak, Adam J Gastonguay, Marat R Talipov, Padmanabhan Vakeel, Elise A Span, Kelsey S Kalous, Raman G Kutty, Davin R Jensen, Phani Raj Pokkuluri, Daniel S Sem and 2 more

Open access · hybridAbstract read
In one paragraph

Article in BMC biochemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Jaladhi NayakDepartment of Pediatrics, Medical College of Wisconsin, CRI Developmental Vascular Biology Program, P.O. Box 26509, C3420, 8701 Watertown Plank Road, Milwaukee, WI, 53226, USA. jnayak@mcw.edu.
Adam J GastonguayDepartment of Pediatrics, Medical College of Wisconsin, CRI Developmental Vascular Biology Program, P.O. Box 26509, C3420, 8701 Watertown Plank Road, Milwaukee, WI, 53226, USA. agastong@gmail.com.
Marat R TalipovDepartment of Chemistry, Marquette University, Wehr Chemistry Building, P.O. Box 1881, 535 N. 14th Street, Milwaukee, WI, 53201, USA. marat.talipov@marquette.edu.
Padmanabhan VakeelDepartment of Pediatrics, Medical College of Wisconsin, CRI Developmental Vascular Biology Program, P.O. Box 26509, C3420, 8701 Watertown Plank Road, Milwaukee, WI, 53226, USA. pvakeel@mcw.edu.
Elise A SpanCenter for Structure-based Drug Design and Development, Department of Pharmaceutical Sciences, Concordia University of Wisconsin, Mequon, WI, 53097, USA. elise.span@gmail.com.
Kelsey S KalousCenter for Structure-based Drug Design and Development, Department of Pharmaceutical Sciences, Concordia University of Wisconsin, Mequon, WI, 53097, USA. kekalous@mcw.edu.
Raman G KuttyDepartment of Pediatrics, Medical College of Wisconsin, CRI Developmental Vascular Biology Program, P.O. Box 26509, C3420, 8701 Watertown Plank Road, Milwaukee, WI, 53226, USA. rkutty@mcw.edu.
Davin R JensenDepartment of Biochemistry, Medical College of Wisconsin, Children's Research Institute (CRI) Developmental Vascular Biology Program, Translational and Biomedical Research Center, 8701 Watertown Plank Road, P.O. Box 26509, Milwaukee, WI, 53226, USA. djensen@mcw.edu.
Phani Raj PokkuluriBiosciences Division, Argonne National Laboratory, 9700 S. Cass Avenue Lemont, Argonne, IL, 60439, USA. rajp@anl.gov.
Daniel S SemCenter for Structure-based Drug Design and Development, Department of Pharmaceutical Sciences, Concordia University of Wisconsin, Mequon, WI, 53097, USA. Daniel.Sem@cuw.edu.
Rajendra RathoreDepartment of Chemistry, Marquette University, Wehr Chemistry Building, P.O. Box 1881, 535 N. 14th Street, Milwaukee, WI, 53201, USA. rajendra.rathore@marquette.edu.
Ramani RamchandranDepartment of Pediatrics, Medical College of Wisconsin, CRI Developmental Vascular Biology Program, P.O. Box 26509, C3420, 8701 Watertown Plank Road, Milwaukee, WI, 53226, USA. rramchan@mcw.edu.
Medical College of Wisconsin · USUniversity of Wisconsin System · USMarquette University · USArgonne National Laboratory · US

Funding

Targeting DUSP-5 to Treat Vascular AnomaliesR01HL112639 · NHLBI · MEDICAL COLLEGE OF WISCONSIN · PI RAMCHANDRAN, RAMANI · 2012 to 2016
$2.6M
Roundabout4 signaling in endothelial cellsR01HL090712 · NHLBI · MEDICAL COLLEGE OF WISCONSIN · PI RAMCHANDRAN, RAMANI · 2009 to 2012
$1.8M
Snrk-1 and Dusp-5 co-ordinately regulate vascular development in vertebratesR01HL102745 · NHLBI · MEDICAL COLLEGE OF WISCONSIN · PI RAMCHANDRAN, RAMANI · 2011 to 2014
$1.5M
Structural Characterization of the M. tuberculosis Thioredoxin SystemR15AI101975 · NIAID · CONCORDIA UNIVERSITY WISCONSIN · PI SEM, DANIEL S · 2012 to 2012
$383k
NHLBI NIH HHS HL090712NHLBI NIH HHS HL102745NHLBI NIH HHS HL112639NHLBI NIH HHS R01 HL090712NHLBI NIH HHS R01 HL102745NHLBI NIH HHS R01 HL112639NIAID NIH HHS AI101975NIAID NIH HHS R15 AI101975
6 · The paper itself

Abstract

backgroundThe mitogen-activated protein kinases (MAPKs) pathway is critical for cellular signaling, and proteins such as phosphatases that regulate this pathway are important for normal tissue development. Based on our previous work on dual specificity phosphatase-5 (DUSP5), and its role in embryonic vascular development and disease, we hypothesized that mutations in DUSP5 will affect its function.

resultsIn this study, we tested this hypothesis by generating full-length glutathione-S-transferase-tagged DUSP5 and serine 147 proline mutant (S147P) proteins from bacteria. Light scattering analysis, circular dichroism, enzymatic assays and molecular modeling approaches have been performed to extensively characterize the protein form and function. We demonstrate that both proteins are active and, interestingly, the S147P protein is hypoactive as compared to the DUSP5 WT protein in two distinct biochemical substrate assays. Furthermore, due to the novel positioning of the S147P mutation, we utilize computational modeling to reconstruct full-length DUSP5 and S147P to predict a possible mechanism for the reduced activity of S147P.

conclusionTaken together, this is the first evidence of the generation and characterization of an active, full-length, mutant DUSP5 protein which will facilitate future structure-function and drug development-based studies.

Indexed as

Amino Acid SequenceAmino Acid SubstitutionCatalytic DomainDual-Specificity PhosphatasesExtracellular Signal-Regulated MAP KinasesHumansMolecular Dynamics SimulationMolecular Sequence DataProtein BindingProtein BiosynthesisDual-Specificity PhosphatasesDUSP5 protein, humanExtracellular Signal-Regulated MAP Kinases

Identifiers

PMID25519881
PMCPMC4299175
OpenAlexW2054864176

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.