Evidence map›Paper›PMID 25519736›Full record

ArticleAmerican journal of physiology. Regulatory, integrative and comparative physiology2015

Fetal iron deficiency induces chromatin remodeling at the Bdnf locus in adult rat hippocampus.

Phu V Tran, Bruce C Kennedy, Yu-Chin Lien, Rebecca A Simmons, Michael K Georgieff

Abstract read
In one paragraph

Article in American journal of physiology. Regulatory, integrative and comparative physiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
3.6field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 91 citations in OpenAlex.

  1. Article
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  7. Why cells need iron: a compendium of iron utilisation.Trends in endocrinology and metabolism: TEM · 2024
    Review
  8. Article
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  15. Identifying and treating iron deficiency anemia in pregnancy.Hematology. American Society of Hematology. Education Program · 2023
    Article
  16. The importance of iron deficiency in pregnancy on fetal, neonatal, and infant neurodevelopmental outcomes.International journal of gynaecology and obstetrics: the official organ of the International Federation of Gynaecology and Obstetrics · 2023
    Review
  17. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Phu V TranDepartment of Pediatrics, University of Minnesota, Minneapolis, Minnesota; Center for Neurobehavioral Development, University of Minnesota, Minneapolis, Minnesota; tranx271@umn.edu.
Bruce C KennedyDepartment of Pediatrics, University of Minnesota, Minneapolis, Minnesota; Graduate Program in Neuroscience, University of Minnesota, Minneapolis, Minnesota; and.
Yu-Chin LienChildren's Hospital Philadelphia, University of Pennsylvania, Philadelphia, Pennsylvania.
Rebecca A SimmonsChildren's Hospital Philadelphia, University of Pennsylvania, Philadelphia, Pennsylvania.
Michael K GeorgieffDepartment of Pediatrics, University of Minnesota, Minneapolis, Minnesota; Center for Neurobehavioral Development, University of Minnesota, Minneapolis, Minnesota; Graduate Program in Neuroscience, University of Minnesota, Minneapolis, Minnesota; and.
University of Minnesota · USChildren's Hospital of Philadelphia · USPhiladelphia University · US

Funding

Training in PharmacoNeuroImmune Substance Abuse ResearchT32DA007097 · NIDA · UNIVERSITY OF MINNESOTA TWIN CITIES · PI MOLITOR, THOMAS WILLIAM · 1985 to 2021
$13.1M
NEWBORN IRON DEFICIENCYR01HD029421 · NICHD · UNIVERSITY OF MINNESOTA TWIN CITIES · PI GEORGIEFF, MICHAEL K. · 2000 to 2015
$4.4M
NICHD NIH HHS R01 HD029421NICHD NIH HHS R01-HD29421-17NIDA NIH HHS T32 DA007097
6 · The paper itself

Abstract

Fetal and subsequent early postnatal iron deficiency causes persistent impairments in cognitive and affective behaviors despite prompt postnatal iron repletion. The long-term cognitive impacts are accompanied by persistent downregulation of brain-derived neurotrophic factor (BDNF), a factor critical for hippocampal plasticity across the life span. This study determined whether early-life iron deficiency epigenetically modifies the Bdnf locus and whether dietary choline supplementation during late gestation reverses these modifications. DNA methylation and histone modifications were assessed at the Bdnf-IV promoter in the hippocampus of rats [at postnatal day (PND) 65] that were iron-deficient (ID) during the fetal-neonatal period. Iron deficiency was induced in rat pups by providing pregnant and nursing dams an ID diet (4 mg/kg Fe) from gestational day (G) 2 through PND7, after which iron deficiency was treated with an iron-sufficient (IS) diet (200 mg/kg Fe). This paradigm resulted in about 60% hippocampal iron loss on PND15 with complete recovery by PND65. For choline supplementation, pregnant rat dams were given dietary choline (5 g/kg) from G11 through G18. DNA methylation was determined by quantitative sequencing of bisulfite-treated DNA, revealing a small alteration at the Bdnf-IV promoter. Chromatin immunoprecipitation analysis showed increased HDAC1 binding accompanied by reduced binding of RNA polymerase II and USF1 at the Bdnf-IV promoter in formerly ID rats. These changes were correlated with altered histone methylations. Prenatal choline supplementation reverses these epigenetic modifications. Collectively, the findings identify epigenetic modifications as a potential mechanism to explicate the long-term repression of Bdnf following fetal and early postnatal iron deficiency.

Indexed as

Chromatin Assembly and DisassemblyDNA MethylationEpigenesis, GeneticIron DeficienciesPrenatal Exposure Delayed EffectsAge FactorsAnimalsBinding SitesBrain-Derived Neurotrophic FactorCholineDisease Models, AnimalDown-RegulationFemaleGestational AgeHippocampusHistone Deacetylase 1Brain-Derived Neurotrophic FactorCholineHdac1 protein, ratHistone Deacetylase 1HistonesIronRNA Polymerase IIUpstream Stimulatory FactorsUsf1 protein, ratDNA methylationepigeneticshippocampushistone methylationiron deficiency

Identifiers

PMID25519736
PMCPMC4329464
OpenAlexW2142217173

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.