Evidence map›Paper›PMID 25519431›Full record

ArticleBiostatistics (Oxford, England)2015

Detecting differential patterns of interaction in molecular pathways.

Masanao Yajima, Donatello Telesca, Yuan Ji, Peter Müller

Abstract read
In one paragraph

Article in Biostatistics (Oxford, England), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Article
  3. Bayesian graphical models for modern biological applications.Statistical methods & applications · 2022
    Review
  4. Article
  5. Article
  6. Bayesian Joint Modeling of Multiple Brain Functional Networks.Journal of the American Statistical Association · 2021
    Article
  7. Bayesian Graphical Regression.Journal of the American Statistical Association · 2019
    Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Masanao YajimaFred Hutchinson Cancer Research Center, WA 98109, USA myajima@fredhutch.org.
Donatello TelescaUCLA, Department of Biostatistics, Los Angeles, CA 90095-1772, USA.
Yuan JiCenter for Clinical and Research Informatics, NorthShore University HealthSystem, Highland Park, IL 60035, USA.
Peter MüllerDepartment of Mathematics, The University of Texas at Austin, TX 78712, USA.

Funding

Consistent variable selection in p>>n settingsR01CA158113 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI JOHNSON, VALEN EARL · 2011 to 2020
$2.8M
Population Pharmacokinetics/Dynamic: Statistical IssuesR01CA075981 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI MUELLER, PETER · 1998 to 2011
$2.1M
Bayesian models for cancer prognosis by integrating diverse types of dataR01CA132897 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI JI, YUAN, MUELLER, PETER · 2008 to 2019
$2.1M
NCI NIH HHS R01 CA075981NCI NIH HHS R01CA075981NCI NIH HHS R01 CA132897NCI NIH HHS R01 CA158113NCI NIH HHS R01 CA158113-01
6 · The paper itself

Abstract

We consider statistical inference for potentially heterogeneous patterns of association characterizing the expression of bio-molecular pathways across different biologic conditions. We discuss a modeling approach based on Gaussian-directed acyclic graphs and provide computational and methodological details needed for posterior inference. Our application finds motivation in reverse phase protein array data from a study on acute myeloid leukemia, where interest centers on contrasting refractory versus relapsed patients. We illustrate the proposed method through both synthetic and case study data.

Indexed as

Models, TheoreticalHumansLeukemia, MyeloidMetabolic Networks and PathwaysSignal TransductionConditional independenceDirected acyclic graphsGaussian Markov modelsReversible jumps MCMC

Identifiers

PMID25519431
PMCPMC4441103

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.