Evidence map›Paper›PMID 25517154›Full record

ArticleBiophysical journal2014

Role of denatured-state properties in chaperonin action probed by single-molecule spectroscopy.

Hagen Hofmann, Frank Hillger, Cyrille Delley, Armin Hoffmann, Shawn H Pfeil, Daniel Nettels, Everett A Lipman, Benjamin Schuler

Abstract read
In one paragraph

Article in Biophysical journal, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Integrated view of internal friction in unfolded proteins from single-molecule FRET, contact quenching, theory, and simulations.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Hagen HofmannDepartment of Biochemistry, University of Zurich, Zurich, Switzerland. Electronic address: hagen.hofmann@weizmann.ac.il.
Frank HillgerDepartment of Biochemistry, University of Zurich, Zurich, Switzerland.
Cyrille DelleyDepartment of Biochemistry, University of Zurich, Zurich, Switzerland.
Armin HoffmannDepartment of Biochemistry, University of Zurich, Zurich, Switzerland.
Shawn H PfeilDepartment of Physics, University of California, Santa Barbara, Santa Barbara, CA.
Daniel NettelsDepartment of Biochemistry, University of Zurich, Zurich, Switzerland.
Everett A LipmanDepartment of Physics, University of California, Santa Barbara, Santa Barbara, CA.
Benjamin SchulerDepartment of Biochemistry, University of Zurich, Zurich, Switzerland. Electronic address: schuler@bioc.uzh.ch.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The bacterial chaperonin GroEL/GroES assists folding of a broad spectrum of denatured and misfolded proteins. Here, we explore the limits of this remarkable promiscuity by mapping two denatured proteins with very different conformational properties, rhodanese and cyclophilin A, during binding and encapsulation by GroEL/GroES with single-molecule spectroscopy, microfluidic mixing, and ensemble kinetics. We find that both proteins bind to GroEL with high affinity in a reaction involving substantial conformational adaptation. However, whereas the compact denatured state of rhodanese is encapsulated efficiently upon addition of GroES and ATP, the more expanded and unstructured denatured cyclophilin A is not encapsulated but is expelled into solution. The origin of this surprising disparity is the weaker interactions of cyclophilin A with a transiently formed GroEL-GroES complex, which may serve as a crucial checkpoint for substrate discrimination.

Indexed as

Protein DenaturationAmino Acid SequenceBacterial ProteinsChaperonin 10Chaperonin 60Molecular Sequence DataSpectrometry, FluorescenceBacterial ProteinsChaperonin 10Chaperonin 60

Identifiers

PMID25517154
PMCPMC4269778

What OpenQuestion holds

Textmetadata
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.