Evidence map›Paper›PMID 25517151›Full record

ArticleBiophysical journal2014

Biophysical properties of novel 1-deoxy-(dihydro)ceramides occurring in mammalian cells.

Noemi Jiménez-Rojo, Jesús Sot, Jon V Busto, Walt A Shaw, Jingjing Duan, Alfred H Merrill, Alicia Alonso, Félix M Goñi

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 55 citations in OpenAlex.

  1. Trial
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Demyelination in hereditary sensory neuropathy type-1C.Annals of clinical and translational neurology · 2020
    Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Sphingolipids as Emerging Mediators in Retina Degeneration.Frontiers in cellular neuroscience · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Noemi Jiménez-RojoUnidad de Biofísica (CSIC, UPV/EHU), and Departamento de Bioquímica, Universidad del País Vasco, Bilbao, Spain.
Jesús SotUnidad de Biofísica (CSIC, UPV/EHU), and Departamento de Bioquímica, Universidad del País Vasco, Bilbao, Spain.
Jon V BustoUnidad de Biofísica (CSIC, UPV/EHU), and Departamento de Bioquímica, Universidad del País Vasco, Bilbao, Spain.
Walt A ShawAvanti Polar Lipids, Alabaster, Alabama.
Jingjing DuanSchool of Biology and Petite Institute for Bioengineering and Bioscience, Georgia Institute of Technology, Atlanta, Georgia.
Alfred H MerrillSchool of Biology and Petite Institute for Bioengineering and Bioscience, Georgia Institute of Technology, Atlanta, Georgia.
Alicia AlonsoUnidad de Biofísica (CSIC, UPV/EHU), and Departamento de Bioquímica, Universidad del País Vasco, Bilbao, Spain.
Félix M GoñiUnidad de Biofísica (CSIC, UPV/EHU), and Departamento de Bioquímica, Universidad del País Vasco, Bilbao, Spain. Electronic address: felix.goni@ehu.es.
University of the Basque Country · ESGeorgia Institute of Technology · USAvanti Polar Lipids (United States) · US

Funding

Characterization of Mammalian Ceramide SynthasesR01GM076217 · NIGMS · GEORGIA INSTITUTE OF TECHNOLOGY · PI MERRILL, ALFRED HARRISON · 2007 to 2015
$2.4M
NIGMS NIH HHS GM076217NIGMS NIH HHS R01 GM076217
6 · The paper itself

Abstract

Ceramides and dihydroceramides are N-acyl derivatives of sphingosine and sphinganine, respectively, which are the major sphingoid-base backbones of mammals. Recent studies have found that mammals, like certain other organisms, also produce 1-deoxy-(dihydro)ceramides (1-deoxyDHCers) that contain sphingoid bases lacking the 1-hydroxyl- or 1-hydroxymethyl- groups. The amounts of these compounds can be substantial-indeed, we have found comparable levels of 1-deoxyDHCers and ceramides in RAW 264.7 cells maintained in culture. The biophysical properties of 1-deoxyDHCers have not yet been reported, although these lipids might play important roles in normal cell regulation and in the pathology of diseases in which they are elevated, such as hereditary sensory autonomic neuropathies or diabetes. This study uses several approaches, including surface-pressure measurements, differential scanning calorimetry, and confocal microscopy, to study the behavior of 1-deoxyDHCers of different N-acyl-chain lengths and their interaction with sphingomyelin (SM). The thermotropic behaviors of 1-deoxyDHCers alone and in mixtures with SM are described, together with their interactions in monolayers and giant unilamellar vesicles. The gel-fluid transition temperatures of the pure compounds increase in the order 1-deoxyceramide < ceramide ≈ 1-deoxyDHCer < 1-(deoxymethyl)DHCer. In general, canonical ceramides are more miscible with SM in bilayers than are 1-deoxyceramides, and 1-(deoxymethyl)DHCers are the most hydrophobic among them, not even capable of forming monolayers at the air-water interface. Thus, these properties suggest that 1-deoxyDHCer can influence the properties of cellular membranes in ways that might affect biological function/malfunction.

Indexed as

AnimalsCell LineCeramidesMiceUnilamellar LiposomesCeramidesdihydroceramideUnilamellar Liposomes

Identifiers

PMID25517151
PMCPMC4269796
OpenAlexW1968446569

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.