Evidence map›Paper›PMID 25516599›Full record

ArticleThe Plant cell2014

MicroRNA408 is critical for the HY5-SPL7 gene network that mediates the coordinated response to light and copper.

Huiyong Zhang, Xin Zhao, Jigang Li, Huaqing Cai, Xing Wang Deng, Lei Li

Abstract read
In one paragraph

Article in The Plant cell, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 89 papers.

0numbers the graph read from it
0cells of the map it votes in
89citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

89 citing papers in PubMed.

  1. Article
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  5. Review
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  8. MicroRNA gatekeepers: Orchestrating rhizospheric dynamics.Journal of integrative plant biology · 2025
    Review
  9. Review
  10. Review
  11. Review
  12. Article
  13. Review
  14. Article
  15. Overexpression of lily MicroRNA156-resistantFrontiers in plant science · 2024
    Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article

29 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Huiyong ZhangState Key Laboratory of Protein and Plant Gene Research, Peking-Tsinghua Center for Life Sciences, College of Life Sciences, Peking University, Beijing 100871, China Department of Biology, University of Virginia, Charlottesville, Virginia 22904 College of Life Sciences, Henan Agricultural University, Zhengzhou 450002, China.
Xin ZhaoDepartment of Biology, University of Virginia, Charlottesville, Virginia 22904.
Jigang LiDepartment of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, Connecticut 06520 State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University, Beijing 100193, China.
Huaqing CaiDepartment of Cell Biology, Johns Hopkins University, School of Medicine, Baltimore, Maryland 21205.
Xing Wang DengDepartment of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, Connecticut 06520.
Lei LiState Key Laboratory of Protein and Plant Gene Research, Peking-Tsinghua Center for Life Sciences, College of Life Sciences, Peking University, Beijing 100871, China Department of Biology, University of Virginia, Charlottesville, Virginia 22904 lei.li@pku.edu.cn.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Light and copper are important environmental determinants of plant growth and development. Despite the wealth of knowledge on both light and copper signaling, the molecular mechanisms that integrate the two pathways remain poorly understood. Here, we use Arabidopsis thaliana to demonstrate an interaction between SQUAMOSA PROMOTER BINDING PROTEIN-LIKE7 (SPL7) and ELONGATED HYPOCOTYL5 (HY5), which mediate copper and light signaling, respectively. Through whole-genome chromatin immunoprecipitation and RNA sequencing analyses, we elucidated the SPL7 regulon and compared it with that of HY5. We found that the two transcription factors coregulate many genes, including those involved in anthocyanin accumulation and photosynthesis. Moreover, SPL7 and HY5 act coordinately to transcriptionally regulate MIR408, which results in differential expression of microRNA408 (miR408) and its target genes in response to changing light and copper conditions. We demonstrate that this regulation is tied to copper allocation to the chloroplast and plastocyanin levels. Finally, we found that constitutively activated miR408 rescues the distinct developmental defects of the hy5, spl7, and hy5 spl7 mutants. These findings revealed the existence of crosstalk between light and copper, mediated by a HY5-SPL7 network. Furthermore, integration of transcriptional and posttranscriptional regulation is critical for governing proper metabolism and development in response to combined copper and light signaling.

Indexed as

Gene Regulatory NetworksLightArabidopsisArabidopsis ProteinsBasic-Leucine Zipper Transcription FactorsChromatin ImmunoprecipitationCopperDNA-Binding ProteinsGene Expression Regulation, PlantGenome, PlantMicroRNAsNuclear ProteinsSequence Analysis, RNASignal TransductionTranscription FactorsArabidopsis ProteinsBasic-Leucine Zipper Transcription FactorsCopperDNA-Binding ProteinsHY5 protein, ArabidopsisMicroRNAsMIRN408 microRNA, ArabidopsisNuclear ProteinsSPL7 protein, ArabidopsisTranscription Factors

Identifiers

PMID25516599
PMCPMC4311192

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.