Evidence map›Paper›PMID 25516403›Full record

ArticleProtein science : a publication of the Protein Society2015

Design of an allosterically regulated retroaldolase.

Elizabeth A Raymond, Korrie L Mack, Jennifer H Yoon, Olesia V Moroz, Yurii S Moroz, Ivan V Korendovych

Abstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Review
  3. MinimalistACS catalysis · 2019
    Article
  4. Article
  5. A Designed Enzyme Promotes Selective Post-translational Acylation.Chembiochem : a European journal of chemical biology · 2018
    Article
  6. Rational and Semirational Protein Design.Methods in molecular biology (Clifton, N.J.) · 2018
    Review
  7. Incorporating an allosteric regulatory site in an antibody through backbone design.Protein science : a publication of the Protein Society · 2017
    Article
  8. Review
  9. Protein engineering in the 21st century.Protein science : a publication of the Protein Society · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Elizabeth A RaymondDepartment of Chemistry, Syracuse University, Syracuse, New York, 13244.
Korrie L Mack
Jennifer H Yoon
Olesia V Moroz
Yurii S Moroz
Ivan V Korendovych

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We employed a minimalist approach for design of an allosterically controlled retroaldolase. Introduction of a single lysine residue into the nonenzymatic protein calmodulin led to a 15,000-fold increase in the second order rate constant for retroaldol reaction with methodol as a substrate. The resulting catalyst AlleyCatR is active enough for subsequent directed evolution in crude cell bacterial lysates. AlleyCatR's activity is allosterically regulated by Ca(2+) ions. No catalysis is observed in the absence of the metal ion. The increase in catalytic activity originates from the hydrophobic interaction of the substrate (∼2000-fold) and the change in the apparent pKa of the active lysine residue.

Indexed as

Allosteric SiteCalciumCalmodulinEnzyme StabilityFructose-Bisphosphate AldolaseLysineModels, MolecularProtein EngineeringCalciumCalmodulinFructose-Bisphosphate AldolaseLysinealdolasecalmodulinenzyme catalysismetalloproteinsprotein design

Identifiers

PMID25516403
PMCPMC4380986

What OpenQuestion holds

Textmetadata
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.