Evidence map›Paper›PMID 25516070›Full record

ArticleJournal of clinical immunology2015

Identification of patients with RAG mutations previously diagnosed with common variable immunodeficiency disorders.

David Buchbinder, Rebecca Baker, Yu Nee Lee, Juan Ravell, Yu Zhang, Joshua McElwee, Diane Nugent, Emily M Coonrod, Jacob D Durtschi, Nancy H Augustine and 8 more

Open access · greenAbstract readCase Reports
In one paragraph

Article in Journal of clinical immunology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed, 1 pooled it
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 1 synthesis or guideline pooled it, 76 citations in OpenAlex.

  1. Pooled it
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  15. Predicting the Occurrence of Variants in RAG1 and RAG2.Journal of clinical immunology · 2019
    Article
  16. Review
  17. Differentiation of Common Variable Immunodeficiency From IgG Deficiency.The journal of allergy and clinical immunology. In practice · 2019
    Article
  18. Article
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  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 11 institutions in 1 country.

David BuchbinderPediatrics / Hematology, CHOC Children's Hospital-UC Irvine, Orange, CA, USA, dbuchbinder@choc.org.
Rebecca Baker
Yu Nee Lee
Juan Ravell
Yu Zhang
Joshua McElwee
Diane Nugent
Emily M Coonrod
Jacob D Durtschi
Nancy H Augustine
Karl V Voelkerding
Krisztian Csomos
Lindsey Rosen
Sarah Browne
Jolan E Walter
Luigi D Notarangelo
Harry R Hill
Attila Kumánovics
ARUP Institute for Clinical and Experimental PathologyNational Institute of Allergy and Infectious Diseases · USBoston Children's Hospital · USARUP Laboratories (United States) · USChildren's Hospital of Orange County · USHarvard University · USMassachusetts General Hospital · USMerck & Co., Inc., Rahway, NJ, USA (United States) · USNational Institutes of Health · USUniversity of California, Irvine · USUniversity of Utah · US

Funding

Training of Clinical Investigators in Primary Immune DeficienciesU54AI082973 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI PAI, SUNG-YUN · 2009 to 2023
$23.3M
Role of TACI mutations in CVIDP01AI076210 · NIAID · BETH ISRAEL DEACONESS MEDICAL CENTER · PI TERHORST, CORNELIS P · 2009 to 2013
$9.0M
Autoimmunity in Rag Deficiency: A Nexus of Immunodeficiency and DysregulationK08AI103035 · NIAID · UNIVERSITY OF SOUTH FLORIDA · PI WALTER, JOLAN ESZTER · 2012 to 2016
$683k
Intramural NIH HHSNIAID NIH HHS 1K08AI103035-03NIAID NIH HHS 5P01AI076210-04NIAID NIH HHS K08 AI103035NIAID NIH HHS P01 AI076210NIAID NIH HHS U54 AI082973NIAID NIH HHS U54AI082973
6 · The paper itself

Abstract

purposeCombined immunodeficiency (CID) presents a unique challenge to clinicians. Two patients presented with the prior clinical diagnosis of common variable immunodeficiency (CVID) disorder marked by an early age of presentation, opportunistic infections, and persistent lymphopenia. Due to the presence of atypical clinical features, next generation sequencing was applied documenting RAG deficiency in both patients.

methodsTwo different genetic analysis techniques were applied in these patients including whole exome sequencing in one patient and the use of a gene panel designed to target genes known to cause primary immunodeficiency disorders (PIDD) in a second patient. Sanger dideoxy sequencing was used to confirm RAG1 mutations in both patients.

resultsTwo young adults with a history of recurrent bacterial sinopulmonary infections, viral infections, and autoimmune disease as well as progressive hypogammaglobulinemia, abnormal antibody responses, lymphopenia and a prior diagnosis of CVID disorder were evaluated. Compound heterozygous mutations in RAG1 (1) c256_257delAA, p86VfsX32 and (2) c1835A>G, pH612R were documented in one patient. Compound heterozygous mutations in RAG1 (1) c.1566G>T, p.W522C and (2) c.2689C>T, p. R897X) were documented in a second patient post-mortem following a fatal opportunistic infection.

conclusionAstute clinical judgment in the evaluation of patients with PIDD is necessary. Atypical clinical findings such as early onset, granulomatous disease, or opportunistic infections should support the consideration of atypical forms of late onset CID secondary to RAG deficiency. Next generation sequencing approaches provide powerful tools in the investigation of these patients and may expedite definitive treatments.

Indexed as

MutationAgammaglobulinemiaBiopsyChild, PreschoolCommon Variable ImmunodeficiencyDNA Mutational AnalysisFatal OutcomeFemaleHomeodomain ProteinsHumansImmunohistochemistryLung Diseases, InterstitialLymphopeniaTomography, X-Ray ComputedYoung AdultHomeodomain ProteinsRAG-1 protein

Identifiers

PMID25516070
PMCPMC4479182
OpenAlexW2047546168

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.