Evidence map›Paper›PMID 25515047›Full record

ArticleThe Journal of eukaryotic microbiology

Sapocribrum chincoteaguense n. gen. n. sp.: A Small, Scale-bearing Amoebozoan with Flabellinid Affinities.

Daniel J G Lahr, Jessica Grant, Robert Molestina, Laura A Katz, O Roger Anderson

Abstract read
In one paragraph

Article in The Journal of eukaryotic microbiology. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Daniel J G LahrDepartment of Zoology, University of São Paulo, 05508-090, São Paulo, Brazil.
Jessica GrantDepartment of Biological Sciences, Smith College, Northampton, Massachusetts, 01063, USA.
Robert MolestinaProtistology Collection, American Type Culture Collection, Manassas, Virginia, 20110, USA.
Laura A KatzDepartment of Biological Sciences, Smith College, Northampton, Massachusetts, 01063, USA.
O Roger AndersonDepartment of Biology, Lamont-Doherty Earth Observatory of Columbia University, Palisades, New York, 10964, USA.

Funding

Evolution of germline and somatic genomes in the ciliate Chilodonella uncinataR15GM097722 · NIGMS · SMITH COLLEGE · PI KATZ, LAURA ALINE · 2011 to 2011
$265k
NIGMS NIH HHS 1R15GM097722-01NIGMS NIH HHS R15 GM097722
6 · The paper itself

Abstract

The isolate American Type Culture Collection (ATCC)® 50979™ is a small amoebozoan whose actin gene was previously characterized, but did not allow a stable phylogenetic placement. This isolate was originally mis-identified upon deposition, and subsequently mis-illustrated in a recent publication. Here, we provide both a detailed morphological description as well as additional molecular analyses in order to clarify the isolate's phylogenetic relationships. The amoeba is minute (less than 5 μm), and presents the behavior of staying in a fixed location, while emitting one or two thin pseudopods. Transmission electron microscopy reveals that the cell is covered in a layer with embedded scales, giving the cell an armored appearance. Molecular phylogenetic analyses of data (actin, alpha- and beta-tubulin, elongation factor 2, and 14-3-3) from transcriptomes of this and four other isolates reveals that ATCC® 50979(™) is closely related to the recently described Squamamoeba japonica and in a novel, stable clade. Due to the unique nature of the scale covering, as well as other gross morphological characters and the molecular phylogenetic analyses, we formally describe the isolate as Sapocribrum chincoteaguense n. gen. n. sp.

Indexed as

AmoebozoaAnimalsDNA, ProtozoanGene Expression ProfilingMicroscopy, Electron, TransmissionMolecular Sequence DataPhylogenyPseudopodiaSequence Analysis, DNATubulinDNA, ProtozoanTubulinATCC PRA-39Filamoebaphylogenetic analysesSquamamoebatranscriptometransmission electron microscopyTrichosphaerium

Identifiers

PMID25515047
PMCPMC4469638

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.