Evidence map›Paper›PMID 25514573›Full record

ArticleVirology2015

Identification of a polyomavirus microRNA highly expressed in tumors.

Chun Jung Chen, Jennifer E Cox, Kristopher D Azarm, Karen N Wylie, Kevin D Woolard, Patricia A Pesavento, Christopher S Sullivan

Erratum issuedOpen access · greenAbstract read
In one paragraph

Article in Virology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.6field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 33 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Membrane-bound Merkel cell polyomavirus middle T protein constitutively activates PLCγ1 signaling through Src-family kinases.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  5. Role of Virus-Induced Host Cell Epigenetic Changes in Cancer.International journal of molecular sciences · 2021
    Review
  6. Biology of Polyomavirus miRNA.Frontiers in microbiology · 2021
    Review
  7. Review
  8. Review
  9. Article
  10. Review
  11. [76-year-old female with a painless gluteal tumor : Preparation for the specialist examination: part 31].Der Hautarzt; Zeitschrift fur Dermatologie, Venerologie, und verwandte Gebiete · 2019
    Article
  12. Article
  13. MicroRNAs as Potential Biomarkers in Merkel Cell Carcinoma.International journal of molecular sciences · 2018
    Review
  14. The Role of miRNAs in Virus-Mediated Oncogenesis.International journal of molecular sciences · 2018
    Review
  15. Review
  16. Article
  17. Review
4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Chun Jung ChenThe University of Texas at Austin, Molecular Biosciences, Center for Systems and Synthetic Biology, Center for Infectious Disease, 1 University Station A5000, Austin, TX 78712-0162, USA.
Jennifer E CoxThe University of Texas at Austin, Molecular Biosciences, Center for Systems and Synthetic Biology, Center for Infectious Disease, 1 University Station A5000, Austin, TX 78712-0162, USA.
Kristopher D AzarmThe University of Texas at Austin, Molecular Biosciences, Center for Systems and Synthetic Biology, Center for Infectious Disease, 1 University Station A5000, Austin, TX 78712-0162, USA.
Karen N WylieThe University of Texas at Austin, Molecular Biosciences, Center for Systems and Synthetic Biology, Center for Infectious Disease, 1 University Station A5000, Austin, TX 78712-0162, USA.
Kevin D WoolardThe University of California at Davis, Veterinary Medicine, 1 Shields Avenue, Vet Med: PMI, 4206 VM3A, Davis, CA 95616-5270, USA.
Patricia A PesaventoThe University of California at Davis, Veterinary Medicine, 1 Shields Avenue, Vet Med: PMI, 4206 VM3A, Davis, CA 95616-5270, USA.
Christopher S SullivanThe University of Texas at Austin, Molecular Biosciences, Center for Systems and Synthetic Biology, Center for Infectious Disease, 1 University Station A5000, Austin, TX 78712-0162, USA. Electronic address: chris_sullivan@austin.utexas.edu.
The University of Texas at Austin · USUniversity of California, Davis · US

Funding

Role of microRNAs in the SV40 infectious cycleR01AI077746 · NIAID · UNIVERSITY OF TEXAS AT AUSTIN · PI SULLIVAN, CHRISTOPHER S. · 2009 to 2012
$1.1M
NIAID NIH HHS R01 AI077746NIAID NIH HHS R01AI077746
6 · The paper itself

Abstract

Polyomaviruses (PyVs) are associated with tumors including Merkel cell carcinoma (MCC). Several PyVs encode microRNAs (miRNAs) but to date no abundant PyV miRNAs have been reported in tumors. To better understand the function of the Merkel cell PyV (MCPyV) miRNA, we examined phylogenetically-related viruses for miRNA expression. We show that two primate PyVs and the more distantly-related raccoon PyV (RacPyV) encode miRNAs that share genomic position and partial sequence identity with MCPyV miRNAs. Unlike MCPyV miRNA in MCC, RacPyV miRNA is highly abundant in raccoon tumors. RacPyV miRNA negatively regulates reporters of early viral (T antigen) transcripts, yet robust viral miRNA expression is tolerated in tumors. We also identify raccoon miRNAs expressed in RacPyV-associated neuroglial brain tumors, including several likely oncogenic miRNAs (oncomiRs). This work describes the first PyV miRNA abundantly expressed in tumors and is consistent with a possible role for both host and viral miRNAs in RacPyV-associated tumors.

Indexed as

AnimalsBase SequenceGene Expression Regulation, ViralHumansMicroRNAsMolecular Sequence DataNeoplasmsPhylogenyPolyomavirusRaccoonsRNA, ViralMicroRNAsRNA, ViralMCVMerkel cell carcinomamicroRNAmiRNAPolyomavirusRaccoon Polyomavirus

Identifiers

PMID25514573
PMCPMC4323772
OpenAlexW2110615349

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.