Evidence map›Paper›PMID 25514367›Full record

ArticleExperimental lung research2015

DNA methylation profile and expression of surfactant protein A2 gene in lung cancer.

Melissa Grageda, Patricia Silveyra, Neal J Thomas, Susan L DiAngelo, Joanna Floros

Open access · greenAbstract read
In one paragraph

Article in Experimental lung research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.0field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
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  13. The Clinical Signification of Claudin-11 Promoter Hypermethylation for Laryngeal Squamous Cell Carcinoma.Medical science monitor : international medical journal of experimental and clinical research · 2017
    Article
  14. Article
  15. 14-3-3 isoforms bind directly exon B of the 5'-UTR of human surfactant protein A2 mRNA.American journal of physiology. Lung cellular and molecular physiology · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Melissa Grageda1Pediatric Critical Care Division, Department of Pediatrics, Pennsylvania State Children's Hospital, The Pennsylvania State University College of Medicine , Hershey, PA , United States.
Patricia Silveyra
Neal J Thomas
Susan L DiAngelo
Joanna Floros
Pennsylvania State University · USPenn State Milton S. Hershey Medical Center · US

Funding

SURFACTANT PROTEINS AND RESPIRATORY DISTRESS SYNDROMER37HL034788 · NHLBI · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI FLOROS, JOANNA · 1996 to 2005
$3.2M
SURFACTANT PROTEINS AND RESPIRATORY DISTRESS SYNDROMER01HL034788 · NHLBI · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI FLOROS, JOANNA · 1985 to 2011
$3.0M
NHLBI NIH HHS HL-34788NHLBI NIH HHS R01 HL034788NHLBI NIH HHS R37 HL034788
6 · The paper itself

Abstract

Knowledge of the methylation profile of genes allow for the identification of biomarkers that may guide diagnosis and effective treatment of disease. Human surfactant protein A (SP-A) plays an important role in lung homeostasis and immunity, and is encoded by two genes (SFTPA1 and SFTPA2). The goal of this study was to identify differentially methylated CpG sites in the promoter region of the SFTPA2 gene in lung cancer tissue, and to determine the correlation between the promoter's methylation profile and gene expression. For this, we collected 28 pairs of cancerous human lung tissue and adjacent noncancerous (NC) lung tissue: 17 adenocarcinoma (AC), 9 squamous cell carcinoma (SCC), and 2 AC with SCC features, and we evaluated DNA methylation of the SFTPA2 promoter region by bisulfite conversion. Our results identified a higher methylation ratio in one CpG site of the SFTPA2 gene in cancerous tissue versus NC tissue (0.36 versus 0.11, p = 0.001). When assessing AC samples, we also found cancerous tissues associated with a higher methylation ratio (0.43 versus 0.10, p = 0.02). In the SCC group, although cancerous tissue showed a higher methylation ratio (0.22 versus 0.11), this difference was not statistically significant (p = 0.35). Expression of SFTPA2 mRNA and total SP-A protein was significantly lower in cancer tissue when compared to adjacent NC tissue (p < 0.001), and correlated with the hypermethylated status of an SFTPA2 CpG site in AC samples. The findings of this pilot study may hold promise for future use of SFTPA2 as a biomarker for the diagnosis of lung cancer.

Indexed as

AdenocarcinomaBase SequenceBiomarkers, TumorCarcinoma, Squamous CellCpG IslandsDNA MethylationGene ExpressionGene Expression Regulation, NeoplasticHumansLung NeoplasmsMolecular Sequence DataPilot ProjectsPromoter Regions, GeneticPulmonary Surfactant-Associated Protein ARNA, MessengerTranscriptomeBiomarkers, TumorPulmonary Surfactant-Associated Protein ARNA, MessengerSFTPA2 protein, humanadenocarcinomamethylationSP-Asquamous cell carcinoma

Identifiers

PMID25514367
PMCPMC4336205
OpenAlexW2140940559

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.