Evidence map›Paper›PMID 25512534›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

Interspecific introgressive origin of genomic diversity in the house mouse.

Kevin J Liu, Ethan Steinberg, Alexander Yozzo, Ying Song, Michael H Kohn, Luay Nakhleh

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
9.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 100 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Kevin J LiuDepartment of Computer Science and nakhleh@rice.edu kjl@msu.edu hmkohn@rice.edu.
Ethan SteinbergDepartment of Computer Science and.
Alexander YozzoDepartment of Computer Science and.
Ying SongBioSciences, Rice University, Houston, TX 77005.
Michael H KohnBioSciences, Rice University, Houston, TX 77005 nakhleh@rice.edu kjl@msu.edu hmkohn@rice.edu.
Luay NakhlehDepartment of Computer Science and BioSciences, Rice University, Houston, TX 77005 nakhleh@rice.edu kjl@msu.edu hmkohn@rice.edu.
Rice University · US

Funding

TRAINING PROGRAM IN COMPUTATIONAL BIOLOGY AND MEDICINET15LM007093 · NLM · RICE UNIVERSITY · PI Lydia E. Kavraki · 1992 to 2026
$20.8M
Evolutionary Analysis of Bacterial Genomes: High-Throughput Computational ToolsR01LM009494 · NLM · RICE UNIVERSITY · PI NAKHLEH, LUAY · 2008 to 2012
$1.3M
Warfarin Pharmacogenomics in the rat (Rattus norvegicus)R01HL091007 · NHLBI · RICE UNIVERSITY · PI KOHN, HANS MICHAEL · 2008 to 2011
$902k
NHLBI NIH HHS R01 HL091007NHLBI NIH HHS R01-HL091007-01A1NLM NIH HHS R01 LM009494NLM NIH HHS R01LM009494NLM NIH HHS T15 LM007093PHS HHS NLM T15LM007093
6 · The paper itself

Abstract

We report on a genome-wide scan for introgression between the house mouse (Mus musculus domesticus) and the Algerian mouse (Mus spretus), using samples from the ranges of sympatry and allopatry in Africa and Europe. Our analysis reveals wide variability in introgression signatures along the genomes, as well as across the samples. We find that fewer than half of the autosomes in each genome harbor all detectable introgression, whereas the X chromosome has none. Further, European mice carry more M. spretus alleles than the sympatric African ones. Using the length distribution and sharing patterns of introgressed genomic tracts across the samples, we infer, first, that at least three distinct hybridization events involving M. spretus have occurred, one of which is ancient, and the other two are recent (one presumably due to warfarin rodenticide selection). Second, several of the inferred introgressed tracts contain genes that are likely to confer adaptive advantage. Third, introgressed tracts might contain driver genes that determine the evolutionary fate of those tracts. Further, functional analysis revealed introgressed genes that are essential to fitness, including the Vkorc1 gene, which is implicated in rodenticide resistance, and olfactory receptor genes. Our findings highlight the extent and role of introgression in nature and call for careful analysis and interpretation of house mouse data in evolutionary and genetic studies.

Indexed as

Crosses, GeneticGenetic VariationAnimalsFemaleGenomeGeographyHaploidyHybridization, GeneticMaleMiceSpecies Specificityadaptive introgressionhybridizationMus musculusMus spretusPhyloNet-HMM

Identifiers

PMID25512534
PMCPMC4291675
OpenAlexW2091472740

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.