Evidence map›Paper›PMID 25512493›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2014

Regulation of the Rhp26ERCC6/CSB chromatin remodeler by a novel conserved leucine latch motif.

Lanfeng Wang, Oliver Limbo, Jia Fei, Lu Chen, Bong Kim, Jie Luo, Jenny Chong, Ronald C Conaway, Joan W Conaway, Jeff A Ranish and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 24 citations in OpenAlex.

  1. Review
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  7. Review
  8. Article
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  11. Molecular basis of chromatin remodeling by Rhp26, a yeast CSB ortholog.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  12. Review
  13. Article
  14. Article
  15. Def1 interacts with TFIIH and modulates RNA polymerase II transcription.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  16. Article
  17. Review
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 1 country.

Lanfeng WangSkaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA 92093;
Oliver LimboDepartment of Cell and Molecular Biology, The Scripps Research Institute, La Jolla, CA 92037;
Jia FeiSection of Molecular Biology, University of California, San Diego, La Jolla, CA 92093;
Lu ChenStowers Institute for Medical Research, Kansas City, MO 64110; Department of Biochemistry and Molecular Biology, Kansas University Medical Center, Kansas City, KS 66160; and.
Bong KimInstitute for Systems Biology, Seattle, WA 98109.
Jie LuoInstitute for Systems Biology, Seattle, WA 98109.
Jenny ChongSkaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA 92093;
Ronald C ConawayStowers Institute for Medical Research, Kansas City, MO 64110; Department of Biochemistry and Molecular Biology, Kansas University Medical Center, Kansas City, KS 66160; and.
Joan W ConawayStowers Institute for Medical Research, Kansas City, MO 64110; Department of Biochemistry and Molecular Biology, Kansas University Medical Center, Kansas City, KS 66160; and.
Jeff A RanishInstitute for Systems Biology, Seattle, WA 98109.
James T KadonagaSection of Molecular Biology, University of California, San Diego, La Jolla, CA 92093;
Paul RussellDepartment of Cell and Molecular Biology, The Scripps Research Institute, La Jolla, CA 92037;
Dong WangSkaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA 92093; dongwang@ucsd.edu.
University of California, San Diego · USInstitute for Systems Biology · USScripps Research Institute · USUniversity Medical Center · USUniversity of Kansas Medical Center · US

Funding

Yeast Genetics and Stress Response Genes-BiomedicalP42ES010337 · NIEHS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI TUKEY, ROBERT H · 2000 to 2022
$69.8M
Quantitative Systems BiologyP50GM076547 · NIGMS · INSTITUTE FOR SYSTEMS BIOLOGY · PI BALIGA, NITIN S · 2006 to 2016
$30.6M
Studies of the DNA damage checkpointsR01CA077325 · NCI · SCRIPPS RESEARCH INSTITUTE, THE · PI RUSSELL, PAUL · 1998 to 2017
$7.1M
Studies of the DNA Replication CheckpointR01GM059447 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI RUSSELL, PAUL · 1999 to 2016
$6.0M
Molecular Mechanisms for DNA Damage Processing by Transcription MachineryR01GM102362 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI WANG, DONG · 2013 to 2025
$5.6M
Mre11/Rad50 Structural Biology for DNA Damage ResponsesR01CA117638 · NCI · SCRIPPS RESEARCH INSTITUTE, THE · PI RUSSELL, PAUL, TAINER, JOHN A. · 2005 to 2019
$5.6M
DNA REPLICATION COUPLED CHROMATIN ASSEMBLYR01GM058272 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI KADONAGA, JAMES T. · 1999 to 2015
$4.8M
BIOCHEMISTRY OF EUKARYOTIC MESSENGER RNA SYNTHESISR37GM041628 · NIGMS · STOWERS INSTITUTE FOR MEDICAL RESEARCH · PI CONAWAY, RONALD C. · 2000 to 2009
$3.8M
BIOCHEMISTRY OF EUKARYOTIC MESSENGER SYNTHESISR01GM041628 · NIGMS · UNIVERSITY OF TEXAS AUSTIN · PI CONAWAY, JOAN W, CONAWAY, RONALD C. · 1989 to 2013
$1.5M
Structural Basis of Transcriptional Mutagenesis and Arrest of RNA Polymerase IIR00GM085136 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI WANG, DONG · 2010 to 2012
$742k
Mapping the Dynamic Architecture of the Human Mediator ComplexR21CA175849 · NCI · INSTITUTE FOR SYSTEMS BIOLOGY · PI RANISH, JEFFREY A, TAATJES, DYLAN J · 2013 to 2014
$385k
Structural Basis of Transcriptional Mutagenesis and Arrest of RNA Polymerase IIK99GM085136 · NIGMS · STANFORD UNIVERSITY · PI WANG, DONG · 2008 to 2009
$180k
NCI NIH HHS CA077325NCI NIH HHS CA117638NCI NIH HHS R01 CA077325NCI NIH HHS R01 CA117638NCI NIH HHS R21 CA175849NCI NIH HHS R21CA175849NIEHS NIH HHS P42 ES010337NIEHS NIH HHS P42ES010337NIGMS NIH HHS 2P50GM076547NIGMS NIH HHS GM058272NIGMS NIH HHS GM059447NIGMS NIH HHS GM085136NIGMS NIH HHS GM102362NIGMS NIH HHS K99 GM085136NIGMS NIH HHS P50 GM076547NIGMS NIH HHS R00 GM085136NIGMS NIH HHS R01 GM041628NIGMS NIH HHS R01 GM058272NIGMS NIH HHS R01 GM059447NIGMS NIH HHS R01 GM102362NIGMS NIH HHS R37 GM041628
6 · The paper itself

Abstract

CSB/ERCC6 (Cockayne syndrome B protein/excision repair cross-complementation group 6), a member of a subfamily of SWI2/SNF2 (SWItch/sucrose nonfermentable)-related chromatin remodelers, plays crucial roles in gene expression and the maintenance of genome integrity. Here, we report the mechanism of the autoregulation of Rhp26, which is the homolog of CSB/ERCC6 in Schizosaccharomyces pombe. We identified a novel conserved protein motif, termed the "leucine latch," at the N terminus of Rhp26. The leucine latch motif mediates the autoinhibition of the ATPase and chromatin-remodeling activities of Rhp26 via its interaction with the core ATPase domain. Moreover, we found that the C terminus of the protein counteracts this autoinhibition and that both the N- and C-terminal regions of Rhp26 are needed for its proper function in DNA repair in vivo. The presence of the leucine latch motif in organisms ranging from yeast to humans suggests a conserved mechanism for the autoregulation of CSB/ERCC6 despite the otherwise highly divergent nature of the N- and C-terminal regions.

Indexed as

Chromatin Assembly and DisassemblyAmino Acid MotifsChromatinDNA HelicasesHumansProtein Structure, TertiarySchizosaccharomycesSchizosaccharomyces pombe ProteinsChromatinDNA HelicasesSchizosaccharomyces pombe Proteinschromatin remodelingenzyme autoregulationflanking regionsSNF2-like family ATPaseSWI2/SNF2

Identifiers

PMID25512493
PMCPMC4284531
OpenAlexW2164360591

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.