Evidence map›Paper›PMID 25511422›Full record

ArticleBMC bioinformatics2014

Identification of metabolites from 2D (1)H-(13)C HSQC NMR using peak correlation plots.

Tommy Öman, May-Britt Tessem, Tone F Bathen, Helena Bertilsson, Anders Angelsen, Mattias Hedenström, Trygve Andreassen

Abstract read
In one paragraph

Article in BMC bioinformatics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Article
  3. Urine NMR Metabolomics for Precision Oncology in Colorectal Cancer.International journal of molecular sciences · 2022
    Review
  4. Article
  5. Novel Metabolic Signatures of Prostate Cancer Revealed byDiagnostics (Basel, Switzerland) · 2021
    Article
  6. Article
  7. NMR-based metabolomic analysis of wild, greenhouse, and in vitro regenerated shoots ofPhysiology and molecular biology of plants : an international journal of functional plant biology · 2017
    Article
  8. Recent Advances in NMR-Based Metabolomics.Analytical chemistry · 2017
    Review
  9. Review
  10. Article
  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Tommy ÖmanDepartment of Chemistry, Umeå University, Umeå, Sweden. tommy.oman@ltu.se.
May-Britt TessemMI Lab, Department of Circulation and Medical Imaging, Norwegian University of Science and Technology (NTNU), Trondheim, Norway. may-britt.tessem@ntnu.no.
Tone F BathenMI Lab, Department of Circulation and Medical Imaging, Norwegian University of Science and Technology (NTNU), Trondheim, Norway. tone.f.bathen@ntnu.no.
Helena BertilssonDepartment of Urology, St. Olavs Hospital, Trondheim University Hospital, Trondheim, Norway. helena.bertilsson@ntnu.no.
Anders AngelsenDepartment of Urology, St. Olavs Hospital, Trondheim University Hospital, Trondheim, Norway. anders.angelsen@ntnu.no.
Mattias HedenströmDepartment of Chemistry, Umeå University, Umeå, Sweden. mattias.hedenstrom@chem.umu.se.
Trygve AndreassenMR Core Facility, Department of Circulation and Medical Imaging, NTNU, Trondheim, Norway. trygve.andreassen@ntnu.no.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundIdentification of individual components in complex mixtures is an important and sometimes daunting task in several research areas like metabolomics and natural product studies. NMR spectroscopy is an excellent technique for analysis of mixtures of organic compounds and gives a detailed chemical fingerprint of most individual components above the detection limit. For the identification of individual metabolites in metabolomics, correlation or covariance between peaks in (1)H NMR spectra has previously been successfully employed. Similar correlation of 2D (1)H-(13)C Heteronuclear Single Quantum Correlation spectra was recently applied to investigate the structure of heparine. In this paper, we demonstrate how a similar approach can be used to identify metabolites in human biofluids (post-prostatic palpation urine).

resultsFrom 50 (1)H-(13)C Heteronuclear Single Quantum Correlation spectra, 23 correlation plots resembling pure metabolites were constructed. The identities of these metabolites were confirmed by comparing the correlation plots with reported NMR data, mostly from the Human Metabolome Database.

conclusionsCorrelation plots prepared by statistically correlating (1)H-(13)C Heteronuclear Single Quantum Correlation spectra from human biofluids provide unambiguous identification of metabolites. The correlation plots highlight cross-peaks belonging to each individual compound, not limited by long-range magnetization transfer as conventional NMR experiments.

Indexed as

Databases, ChemicalCarbon IsotopesHumansMagnetic Resonance SpectroscopyMaleMetabolomicsPalpationProstateUrinalysisCarbon Isotopes

Identifiers

PMID25511422
PMCPMC4274720

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.