Evidence map›Paper›PMID 25511174›Full record

ArticleToxicology2015

Multi-walled carbon nanotube-induced gene expression in vitro: concordance with in vivo studies.

Brandi N Snyder-Talkington, Chunlin Dong, Xiangyi Zhao, Julian Dymacek, Dale W Porter, Michael G Wolfarth, Vincent Castranova, Yong Qian, Nancy L Guo

Abstract readComparative Study
In one paragraph

Article in Toxicology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. New "Omics" Approaches as Tools to Explore Mechanistic Nanotoxicology.Advances in experimental medicine and biology · 2022
    Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Fibrosis biomarkers in workers exposed to MWCNTs.Toxicology and applied pharmacology · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Brandi N Snyder-TalkingtonPathology and Physiology Research Branch, Health Effects Laboratory Division, National Institute for Occupational Safety and Health, Morgantown, WV 26505, USA.
Chunlin DongMary Babb Randolph Cancer Center, West Virginia University, Morgantown, WV 26506-9300, USA.
Xiangyi ZhaoMary Babb Randolph Cancer Center, West Virginia University, Morgantown, WV 26506-9300, USA.
Julian DymacekLane Department of Computer Science and Electrical Engineering, West Virginia University, Morgantown, WV 26506-6070, USA.
Dale W PorterPathology and Physiology Research Branch, Health Effects Laboratory Division, National Institute for Occupational Safety and Health, Morgantown, WV 26505, USA.
Michael G WolfarthPathology and Physiology Research Branch, Health Effects Laboratory Division, National Institute for Occupational Safety and Health, Morgantown, WV 26505, USA.
Vincent CastranovaPathology and Physiology Research Branch, Health Effects Laboratory Division, National Institute for Occupational Safety and Health, Morgantown, WV 26505, USA; Department of Basic Pharmaceutical Sciences, School of Pharmacy, West Virginia University, Morgantown, WV 26506, USA.
Yong QianPathology and Physiology Research Branch, Health Effects Laboratory Division, National Institute for Occupational Safety and Health, Morgantown, WV 26505, USA. Electronic address: yaq2@cdc.gov.
Nancy L GuoMary Babb Randolph Cancer Center, West Virginia University, Morgantown, WV 26506-9300, USA. Electronic address: lguo@hsc.wvu.edu.

Funding

West Virginia IDEA-CTRU54GM104942 · NIGMS · WEST VIRGINIA UNIVERSITY · PI Sally Lynn Hodder · 2012 to 2026
$81.0M
Systematic assessment of multi-walled carbon nanotubes in pulmonary diseaseR01ES021764 · NIEHS · WEST VIRGINIA UNIVERSITY · PI GUO, NANCY LAN · 2012 to 2016
$1.7M
A Novel Computational Framework for Individualized Clinical Decision-MakingR01LM009500 · NLM · WEST VIRGINIA UNIVERSITY · PI GUO, NANCY LAN · 2008 to 2010
$987k
A Novel Computational Framework for individualized clinical decision-makingR56LM009500 · NLM · WEST VIRGINIA UNIVERSITY · PI GUO, NANCY LAN · 2012 to 2013
$499k
NIEHS NIH HHS R01 ES021764NIEHS NIH HHS R01ES021764NIGMS NIH HHS U54 GM104942NLM NIH HHS R01 LM009500NLM NIH HHS R56 LM009500NLM NIH HHS R56LM009500
6 · The paper itself

Abstract

There is a current interest in reducing the in vivo toxicity testing of nanomaterials in animals by increasing toxicity testing using in vitro cellular assays; however, toxicological results are seldom concordant between in vivo and in vitro models. This study compared global multi-walled carbon nanotube (MWCNT)-induced gene expression from human lung epithelial and microvascular endothelial cells in monoculture and coculture with gene expression from mouse lungs exposed to MWCNT. Using a cutoff of 10% false discovery rate and 1.5 fold change, we determined that there were more concordant genes (gene expression both up- or downregulated in vivo and in vitro) expressed in both cell types in coculture than in monoculture. When reduced to only those genes involved in inflammation and fibrosis, known outcomes of in vivo MWCNT exposure, there were more disease-related concordant genes expressed in coculture than monoculture. Additionally, different cellular signaling pathways are activated in response to MWCNT dependent upon culturing conditions. As coculture gene expression better correlated with in vivo gene expression, we suggest that cellular cocultures may offer enhanced in vitro models for nanoparticle risk assessment and the reduction of in vivo toxicological testing.

Indexed as

AnimalsCells, CulturedCoculture TechniquesEndothelial CellsEpithelial CellsGene Expression ProfilingGene Expression RegulationGene Regulatory NetworksGenetic MarkersHumansInhalation ExposureLungMaleMice, Inbred C57BLNanotubes, CarbonOligonucleotide Array Sequence AnalysisGenetic MarkersNanotubes, CarbonRNA, MessengerCocultureCorrelationGene expressionIn vitroIn vivo

Identifiers

PMID25511174
PMCPMC4308557

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.