Evidence map›Paper›PMID 25510865›Full record

ArticleNature communications2014

Transposable element islands facilitate adaptation to novel environments in an invasive species.

Lukas Schrader, Jay W Kim, Daniel Ence, Aleksey Zimin, Antonia Klein, Katharina Wyschetzki, Tobias Weichselgartner, Carsten Kemena, Johannes Stökl, Eva Schultner and 6 more

Open access · hybridAbstract read
In one paragraph

Article in Nature communications, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 112 papers.

0numbers the graph read from it
0cells of the map it votes in
112citing papers in PubMed
10.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

112 citing papers in PubMed, 242 citations in OpenAlex.

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  4. The genome of a keystone predator: adaptive innovations in Charonia tritonis drive specialized predation and coral reef resilience.DNA research : an international journal for rapid publication of reports on genes and genomes · 2026
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  16. From Egg to Adult: A Developmental Table of the Ant Monomorium pharaonis.Journal of experimental zoology. Part B, Molecular and developmental evolution · 2024
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52 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 9 institutions in 4 countries.

Lukas SchraderInstitut für Zoologie, Universität Regensburg, 93053 Regensburg, Germany.
Jay W KimDepartment of Biomolecular Engineering, University of California at Santa Cruz, Santa Cruz, California 95064, USA.
Daniel EnceEccles Institute of Human Genetics, University of Utah, Salt Lake City, Utah 84112, USA.
Aleksey ZiminInstitute for Physical Sciences and Technology, University of Maryland, College Park, Maryland 20742, USA.
Antonia KleinInstitut für Zoologie, Universität Regensburg, 93053 Regensburg, Germany.
Katharina WyschetzkiInstitut für Zoologie, Universität Regensburg, 93053 Regensburg, Germany.
Tobias WeichselgartnerInstitut für Zoologie, Universität Regensburg, 93053 Regensburg, Germany.
Carsten KemenaInstitute for Evolution and Biodiversity, Westfälische Wilhelms-Universität, 48149 Münster, Germany.
Johannes StöklInstitut für Zoologie, Universität Regensburg, 93053 Regensburg, Germany.
Eva SchultnerDepartment of Biosciences, University of Helsinki, 00014 Helsinki, Finland.
Yannick WurmSchool of Biological and Chemical Sciences, Queen Mary University of London, London E1 4NS, UK.
Christopher D SmithDepartment of Biology, San Francisco State University, San Francisco, California 94132, USA.
Mark Yandell1] Eccles Institute of Human Genetics, University of Utah, Salt Lake City, Utah 84112, USA [2] Utah Center for Genetic Discovery, University of Utah, Salt Lake City 84112, USA.
Jürgen HeinzeInstitut für Zoologie, Universität Regensburg, 93053 Regensburg, Germany.
Jürgen GadauSchool of Life Sciences, Arizona State University, Tempe, Arizona 85287, USA.
Jan OettlerInstitut für Zoologie, Universität Regensburg, 93053 Regensburg, Germany.
University of Regensburg · DEUniversity of Utah · USArizona State University · USPhysical Sciences (United States) · USQueen Mary University of London · GBSan Francisco State University · USUniversity of California, Santa Cruz · USUniversity of Helsinki · FIUniversity of Münster · DE

Funding

Reliable Assembler for Whole Genome Shotgun Data.R01HG002945 · NHGRI · UNIV OF MARYLAND, COLLEGE PARK · PI YORKE, JAMES A · 2003 to 2013
$2.1M
Biotechnology and Biological Sciences Research Council BB/K004204/1NHGRI NIH HHS R01 HG002945
6 · The paper itself

Abstract

Adaptation requires genetic variation, but founder populations are generally genetically depleted. Here we sequence two populations of an inbred ant that diverge in phenotype to determine how variability is generated. Cardiocondyla obscurior has the smallest of the sequenced ant genomes and its structure suggests a fundamental role of transposable elements (TEs) in adaptive evolution. Accumulations of TEs (TE islands) comprising 7.18% of the genome evolve faster than other regions with regard to single-nucleotide variants, gene/exon duplications and deletions and gene homology. A non-random distribution of gene families, larvae/adult specific gene expression and signs of differential methylation in TE islands indicate intragenomic differences in regulation, evolutionary rates and coalescent effective population size. Our study reveals a tripartite interplay between TEs, life history and adaptation in an invasive species.

Indexed as

DNA Transposable ElementsGenes, InsectGenome, InsectGenomic IslandsIntroduced SpeciesAdaptation, PhysiologicalAnimalsAntsBiological EvolutionBrazilDNA MethylationExonsGene DeletionGene DuplicationJapanPhylogeographyDNA Transposable Elements

Identifiers

PMID25510865
PMCPMC4284661
OpenAlexW2139990416

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.