Evidence map›Paper›PMID 25510499›Full record

ArticleNucleic acids research2015

VectorBase: an updated bioinformatics resource for invertebrate vectors and other organisms related with human diseases.

Gloria I Giraldo-Calderón, Scott J Emrich, Robert M MacCallum, Gareth Maslen, Emmanuel Dialynas, Pantelis Topalis, Nicholas Ho, Sandra Gesing, VectorBase Consortium, Gregory Madey and 2 more

Abstract read
In one paragraph

Article in Nucleic acids research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 403 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
403citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

403 citing papers in PubMed, 2 syntheses or guidelines pooled it.

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  17. Range expansion ofOne health (Amsterdam, Netherlands) · 2025
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343 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Gloria I Giraldo-CalderónDepartment of Biological Sciences, University of Notre Dame, Notre Dame, IN 46556, USA.
Scott J EmrichDepartment of Computer Science and Engineering, University of Notre Dame, Notre Dame, IN 46556, USA ECK Institute for Global Health, University of Notre Dame, Notre Dame, IN 46556, USA semrich@nd.edu.
Robert M MacCallumDepartment of Life Sciences, Imperial College London, South Kensington Campus, London SW7 2AZ, UK.
Gareth MaslenEuropean Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Emmanuel DialynasInstitute of Molecular Biology and Biotechnology (IMBB), FORTH, Vassilika Vouton,Nikolaou Plastira 100, 70013 Heraklion, Crete, Greece.
Pantelis TopalisInstitute of Molecular Biology and Biotechnology (IMBB), FORTH, Vassilika Vouton,Nikolaou Plastira 100, 70013 Heraklion, Crete, Greece.
Nicholas HoDepartment of Life Sciences, Imperial College London, South Kensington Campus, London SW7 2AZ, UK.
Sandra GesingCenter for Research Computing, University of Notre Dame, Notre Dame, IN 46556, USA.
VectorBase Consortium
Gregory MadeyDepartment of Computer Science and Engineering, University of Notre Dame, Notre Dame, IN 46556, USA ECK Institute for Global Health, University of Notre Dame, Notre Dame, IN 46556, USA.
Frank H CollinsDepartment of Biological Sciences, University of Notre Dame, Notre Dame, IN 46556, USA ECK Institute for Global Health, University of Notre Dame, Notre Dame, IN 46556, USA.
Daniel LawsonEuropean Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK lawson@ebi.ac.uk.

Funding

PHS HHS HHSN266200400039CPHS HHS HHSN272200900039CPHS HHS HHSN272201400029C
6 · The paper itself

Abstract

VectorBase is a National Institute of Allergy and Infectious Diseases supported Bioinformatics Resource Center (BRC) for invertebrate vectors of human pathogens. Now in its 11th year, VectorBase currently hosts the genomes of 35 organisms including a number of non-vectors for comparative analysis. Hosted data range from genome assemblies with annotated gene features, transcript and protein expression data to population genetics including variation and insecticide-resistance phenotypes. Here we describe improvements to our resource and the set of tools available for interrogating and accessing BRC data including the integration of Web Apollo to facilitate community annotation and providing Galaxy to support user-based workflows. VectorBase also actively supports our community through hands-on workshops and online tutorials. All information and data are freely available from our website at https://www.vectorbase.org/.

Indexed as

Databases, GeneticDisease VectorsGenomicsAnimalsBiological OntologiesGene Expression ProfilingGenetic VariationGenomeHumansInsecticide ResistanceInternetInvertebratesMetabolic Networks and Pathways

Identifiers

PMID25510499
PMCPMC4383932

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.