ArticleNucleic acids research2015
Update on RefSeq microbial genomes resources.
Article in Nucleic acids research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 83 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
83 citing papers in PubMed.
- Article
- New lytic and new temperate Staphylococcus hyicus phages.Virus genes · 2025Article
- The quest for environmental analytical microbiology: absolute quantitative microbiome using cellular internal standards.Microbiome · 2025Review
- Article
- Evaluation of 16S rRNA genes sequences and genome-based analysis for identification of non-pathogenicFrontiers in microbiology · 2024Article
- MIST: A microbial identification and source tracking system for next-generation sequencing data.iMeta · 2023Article
- Automating microbial taxonomy workflows with PHANTASM: phylogenomic analyses for the taxonomy and systematics of microbes.Nucleic acids research · 2023Article
- proGenomes3: approaching one million accurately and consistently annotated high-quality prokaryotic genomes.Nucleic acids research · 2023Article
- Comparison of Metagenomics and Metatranscriptomics Tools: A Guide to Making the Right Choice.Genes · 2022Article
- Genome-resolved metagenomics using environmental and clinical samples.Briefings in bioinformatics · 2021Review
- A Win-Loss Interaction on FeFrontiers in microbiology · 2021Article
- Metabolism of Soy Isoflavones by Intestinal Bacteria: Genome Analysis of anBiomolecules · 2020Article
- Toxin-Antitoxin Gene Pairs Found in TnmBio · 2020Article
- Functional cooperation of the glycine synthase-reductase and Wood-Ljungdahl pathways for autotrophic growth ofProceedings of the National Academy of Sciences of the United States of America · 2020Article
- proGenomes2: an improved database for accurate and consistent habitat, taxonomic and functional annotations of prokaryotic genomes.Nucleic acids research · 2020Article
- High-resolution mycobiota analysis reveals dynamic intestinal translocation preceding invasive candidiasis.Nature medicine · 2020Article
- Gut microbiota profiles of treatment-naïve adult acute myeloid leukemia patients with neutropenic fever during intensive chemotherapy.PloS one · 2020Article
- Baltic Sea methanogens compete with acetogens for electrons from metallic iron.The ISME journal · 2019Article
- A review of methods and databases for metagenomic classification and assembly.Briefings in bioinformatics · 2019Review
- Genome-wide correlation analysis suggests different roles of CRISPR-Cas systems in the acquisition of antibiotic resistance genes in diverse species.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2019Article
23 more citing papers are in PubMed but not listed here.
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
8 authors.
Funding
Abstract
NCBI RefSeq genome collection http://www.ncbi.nlm.nih.gov/genome represents all three major domains of life: Eukarya, Bacteria and Archaea as well as Viruses. Prokaryotic genome sequences are the most rapidly growing part of the collection. During the year of 2014 more than 10,000 microbial genome assemblies have been publicly released bringing the total number of prokaryotic genomes close to 30,000. We continue to improve the quality and usability of the microbial genome resources by providing easy access to the data and the results of the pre-computed analysis, and improving analysis and visualization tools. A number of improvements have been incorporated into the Prokaryotic Genome Annotation Pipeline. Several new features have been added to RefSeq prokaryotic genomes data processing pipeline including the calculation of genome groups (clades) and the optimization of protein clusters generation using pan-genome approach.
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What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.