Evidence map›Paper›PMID 2550896›Full record

ArticleNucleic acids research1989

Oligonucleotide-targeted degradation of U1 and U2 snRNAs reveals differential interactions of simian virus 40 pre-mRNAs with snRNPs.

Z Q Pan, H Ge, X Y Fu, J L Manley, C Prives

Open access · bronzeAbstract read
In one paragraph

Article in Nucleic acids research, 1989. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.1field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 17 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Three small nucleolar RNAs that are involved in ribosomal RNA precursor processing.Proceedings of the National Academy of Sciences of the United States of America · 1997
    Article
  5. Article
  6. Article
  7. Localization of pre-messenger RNA at discrete nuclear sites.Proceedings of the National Academy of Sciences of the United States of America · 1991
    Article
  8. Trans-activating rev protein of the human immunodeficiency virus 1 interacts directly and specifically with its target RNA.Proceedings of the National Academy of Sciences of the United States of America · 1990
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Z Q PanDepartment of Biological Sciences, Columbia University, New York, NY 10027.
H Ge
X Y Fu
J L Manley
C Prives
Columbia University · US

Funding

THE MECHANISM OF PROCESSING OF SV40 EARLY RNAP01CA033620 · NCI · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI PRIVES, CAROL · 1985 to 1992
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MECHANISM OF ALTERNATIVE SPLICING OF SV40 PRE MRNAR01CA046121 · NCI · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI MANLEY, JAMES L. · 1987 to 1991
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NCI NIH HHS CA 33620NCI NIH HHS CA 46121
6 · The paper itself

Abstract

We have investigated the roles of U1 and U2 snRNP particles in SV40 pre-mRNA splicing by oligonucleotide-targeted degradation of U1 or U2 snRNAs in Xenopus laevis oocytes. Microinjection of oligonucleotides complementary to regions of U1 or U2 RNAs either in the presence or absence of SV40 DNA resulted in specific cleavage of the corresponding snRNA. Unexpectedly, degradation of U1 or U2 snRNA was far more extensive when the oligonucleotide was injected without, or prior to, introduction of viral DNA. In either co-injected or pre-injected oocytes, these oligonucleotides caused a dramatic reduction in the accumulation of spliced SV40 mRNA expressed from the viral late region, and a commensurate increase in unspliced late RNA. When pre-injected, two different U2 specific oligonucleotides also inhibited the formation of both large and small tumor antigen spliced early mRNAs. However, even when, by pre-injection of a U1 5' end-specific oligonucleotide, greater than 95% degradation of the U1 snRNA 5' ends occurred in oocytes, no reduction in early pre-mRNA splicing was observed. In contrast, the same U1 5' end oligonucleotide, when added to HeLa splicing extracts, substantially inhibited the splicing of SV40 early pre-mRNA, indicating that U1 mRNP is not totally dispensable for early splicing. These findings confirm and extend our earlier observations which suggested that different pre-mRNAs vary in their requirements for snRNPs.

Indexed as

Oligonucleotide ProbesRNA SplicingAnimalsBase SequenceFemaleHeLa CellsHumansIn Vitro TechniquesMicroinjectionsMolecular Sequence DataNucleic Acid ConformationOocytesRibonucleoproteinsRibonucleoproteins, Small NuclearRNA PrecursorsRNA, Small NuclearOligonucleotide ProbesRibonucleoproteinsRibonucleoproteins, Small NuclearRNA PrecursorsRNA, Small NuclearRNA, Viral

Identifiers

PMID2550896
PMCPMC318349
OpenAlexW2144459588

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.