Evidence map›Paper›PMID 25506299›Full record

ArticleThe plant pathology journal2014

Transcriptome Analysis of Early Responsive Genes in Rice during Magnaporthe oryzae Infection.

Yiming Wang, Soon Jae Kwon, Jingni Wu, Jaeyoung Choi, Yong-Hwan Lee, Ganesh Kumar Agrawal, Shigeru Tamogami, Randeep Rakwal, Sang-Ryeol Park, Beom-Gi Kim and 4 more

Open access · goldAbstract read
In one paragraph

Article in The plant pathology journal, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
6.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 63 citations in OpenAlex.

  1. Article
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  9. Plants (Basel, Switzerland) · 2022
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  10. Understanding the Dynamics of Blast Resistance in Rice-Journal of fungi (Basel, Switzerland) · 2022
    Review
  11. Article
  12. Article
  13. Article
  14. Frontiers in plant science · 2021
    Article
  15. Article
  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 8 institutions in 3 countries.

Yiming WangDepartment of Plant Microbe Interaction, Max Planck Institute for Plant Breeding Research, Carl-von-Linné-Weg 10, 50829 Köln, Germany.
Soon Jae KwonDepartment of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-706, Republic of Korea.
Jingni WuDepartment of Plant Microbe Interaction, Max Planck Institute for Plant Breeding Research, Carl-von-Linné-Weg 10, 50829 Köln, Germany.
Jaeyoung ChoiDepartment of Agricultural Biotechnology, Center for Fungal Genetic Resources and Center for Fungal Pathogenesis, Seoul National University, Seoul 151-921, Republic of Korea.
Yong-Hwan LeeDepartment of Agricultural Biotechnology, Center for Fungal Genetic Resources and Center for Fungal Pathogenesis, Seoul National University, Seoul 151-921, Republic of Korea.
Ganesh Kumar AgrawalResearch Laboratory for Biotechnology and Biochemistry (RLABB), GPO Box 13265, Kathmandu, Nepal ; GRADE Academy Pvt. Ltd., Adarsh Nagar-13, Main Road, Birgunj, Nepal.
Shigeru TamogamiLaboratory of Biologically Active Compounds, Department of Biological Production, Akita Prefectural University, Akita 010-0195, Japan.
Randeep RakwalResearch Laboratory for Biotechnology and Biochemistry (RLABB), GPO Box 13265, Kathmandu, Nepal ; GRADE Academy Pvt. Ltd., Adarsh Nagar-13, Main Road, Birgunj, Nepal ; Organization for Educational Initiatives, University of Tsukuba, Tsukuba 305-8577, Ibaraki, Japan.
Sang-Ryeol ParkMolecular Breeding Division, National Academy of Agricultural Science, RDA, Suwon 441-707, Republic of Korea.
Beom-Gi KimMolecular Breeding Division, National Academy of Agricultural Science, RDA, Suwon 441-707, Republic of Korea.
Ki-Hong JungGraduate School of Biotechnology and Crop Biotech Institute, Kyung Hee University, Yongin 446-701, Republic of Korea.
Kyu Young KangPlant Molecular Biology and Biotechnology Research Center/Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju 660-701, Republic of Korea.
Sang Gon KimPlant Molecular Biology and Biotechnology Research Center/Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju 660-701, Republic of Korea.
Sun Tae KimDepartment of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-706, Republic of Korea.
Gyeongsang National University · KRMax Planck Institute for Plant Breeding Research · DENational Academy of Agricultural Science · KRSeoul National University · KRAkita Prefectural University · JPKyung Hee University · KRPusan National University · KRUniversity of Tsukuba · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Rice blast disease caused by Magnaporthe oryzae is one of the most serious diseases of cultivated rice (Oryza sativa L.) in most rice-growing regions of the world. In order to investigate early response genes in rice, we utilized the transcriptome analysis approach using a 300 K tilling microarray to rice leaves infected with compatible and incompatible M. oryzae strains. Prior to the microarray experiment, total RNA was validated by measuring the differential expression of rice defense-related marker genes (chitinase 2, barwin, PBZ1, and PR-10) by RT-PCR, and phytoalexins (sakuranetin and momilactone A) with HPLC. Microarray analysis revealed that 231 genes were up-regulated (>2 fold change, p < 0.05) in the incompatible interaction compared to the compatible one. Highly expressed genes were functionally characterized into metabolic processes and oxidation-reduction categories. The oxidative stress response was induced in both early and later infection stages. Biotic stress overview from MapMan analysis revealed that the phytohormone ethylene as well as signaling molecules jasmonic acid and salicylic acid is important for defense gene regulation. WRKY and Myb transcription factors were also involved in signal transduction processes. Additionally, receptor-like kinases were more likely associated with the defense response, and their expression patterns were validated by RT-PCR. Our results suggest that candidate genes, including receptor-like protein kinases, may play a key role in disease resistance against M. oryzae attack.

Indexed as

defense responseMagnaporthe oryzaeMapMan analysisricetranscriptomics

Identifiers

PMID25506299
PMCPMC4262287
OpenAlexW2080574609

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.