Evidence map›Paper›PMID 25505271›Full record

ArticleThe Journal of biological chemistry2015

Complex structure and biochemical characterization of the Staphylococcus aureus cyclic diadenylate monophosphate (c-di-AMP)-binding protein PstA, the founding member of a new signal transduction protein family.

Ivan Campeotto, Yong Zhang, Miroslav G Mladenov, Paul S Freemont, Angelika Gründling

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed.

  1. A c-di-AMP-controlled glutamine synthesis pathway promotes persistence ofbioRxiv : the preprint server for biology · 2026
    Article
  2. Article
  3. Article
  4. The role ofJournal of bacteriology · 2024
    Article
  5. Article
  6. Bacterial cell volume regulation and the importance of cyclic di-AMP.Microbiology and molecular biology reviews : MMBR · 2024
    Review
  7. Article
  8. Review
  9. Article
  10. Review
  11. Review
  12. The World of Cyclic Dinucleotides in Bacterial Behavior.Molecules (Basel, Switzerland) · 2020
    Review
  13. Review
  14. c-di-AMP assists osmoadaptation by regulating theThe Journal of biological chemistry · 2019
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Structural and functional studies of pyruvate carboxylase regulation by cyclic di-AMP in lactic acid bacteria.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Ivan CampeottoFrom the Section of Microbiology and MRC Centre for Molecular Bacteriology and Infection.
Yong ZhangFrom the Section of Microbiology and MRC Centre for Molecular Bacteriology and Infection.
Miroslav G MladenovFrom the Section of Microbiology and MRC Centre for Molecular Bacteriology and Infection.
Paul S FreemontSection of Structural Biology, Department of Medicine, Imperial College London, London SW7 2AZ, United Kingdom p.freemont@imperial.ac.uk.
Angelika GründlingFrom the Section of Microbiology and MRC Centre for Molecular Bacteriology and Infection, a.grundling@imperial.ac.uk.

Funding

European Research Council 260371Medical Research Council MR/J006874/1Wellcome Trust 100289
6 · The paper itself

Abstract

Signaling nucleotides are integral parts of signal transduction systems allowing bacteria to cope with and rapidly respond to changes in the environment. The Staphylococcus aureus PII-like signal transduction protein PstA was recently identified as a cyclic diadenylate monophosphate (c-di-AMP)-binding protein. Here, we present the crystal structures of the apo- and c-di-AMP-bound PstA protein, which is trimeric in solution as well as in the crystals. The structures combined with detailed bioinformatics analysis revealed that the protein belongs to a new family of proteins with a similar core fold but with distinct features to classical PII proteins, which usually function in nitrogen metabolism pathways in bacteria. The complex structure revealed three identical c-di-AMP-binding sites per trimer with each binding site at a monomer-monomer interface. Although distinctly different from other cyclic-di-nucleotide-binding sites, as the half-binding sites are not symmetrical, the complex structure also highlighted common features for c-di-AMP-binding sites. A comparison between the apo and complex structures revealed a series of conformational changes that result in the ordering of two anti-parallel β-strands that protrude from each monomer and allowed us to propose a mechanism on how the PstA protein functions as a signaling transduction protein.

Indexed as

Amino Acid SequenceATP-Binding Cassette TransportersBacterial ProteinsCarrier ProteinsComputational BiologyMolecular Sequence DataProtein Structure, SecondaryProtein Structure, TertiarySequence Homology, Amino AcidSignal TransductionStaphylococcus aureusATP-Binding Cassette TransportersBacterial ProteinsCarrier Proteinsphosphate-specific transport protein A, bacteriaBacterial Signal TransductionBioinformaticsComplexCrystal StructureNucleotideStaphylococcus aureus (S. aureus)

Identifiers

PMID25505271
PMCPMC4316997

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.