Evidence map›Paper›PMID 25505266›Full record

ArticleThe Journal of biological chemistry2015

Naturally processed non-canonical HLA-A*02:01 presented peptides.

Chopie Hassan, Eric Chabrol, Lorenz Jahn, Michel G D Kester, Arnoud H de Ru, Jan W Drijfhout, Jamie Rossjohn, J H Frederik Falkenburg, Mirjam H M Heemskerk, Stephanie Gras and 1 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed, 75 citations in OpenAlex.

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  16. Human rhinovirus-specific CD8 T cell responses target conserved and unusual epitopes.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2021
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  19. Overlapping Peptides Elicit Distinct CD8Journal of immunology (Baltimore, Md. : 1950) · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 4 countries.

Chopie HassanFrom the Departments of Immunohematology and Blood Transfusion and.
Eric Chabrolthe Department of Biochemistry and Molecular Biology, School of Biomedical Sciences, Monash University, Clayton 3800, Australia.
Lorenz JahnHematology, Leiden University Medical Center, 2333 ZA Leiden, The Netherlands.
Michel G D KesterHematology, Leiden University Medical Center, 2333 ZA Leiden, The Netherlands.
Arnoud H de RuFrom the Departments of Immunohematology and Blood Transfusion and.
Jan W DrijfhoutFrom the Departments of Immunohematology and Blood Transfusion and.
Jamie Rossjohnthe Department of Biochemistry and Molecular Biology, School of Biomedical Sciences, Monash University, Clayton 3800, Australia, the ARC Centre of Excellence in Advanced Molecular Imaging, Monash University, Clayton 3800, Australia, and the Institute of Infection and Immunity, Cardiff University School of Medicine, Heath Park, Cardiff CF14 4XN, Wales, United Kingdom.
J H Frederik FalkenburgHematology, Leiden University Medical Center, 2333 ZA Leiden, The Netherlands.
Mirjam H M HeemskerkHematology, Leiden University Medical Center, 2333 ZA Leiden, The Netherlands.
Stephanie Grasthe Department of Biochemistry and Molecular Biology, School of Biomedical Sciences, Monash University, Clayton 3800, Australia, the ARC Centre of Excellence in Advanced Molecular Imaging, Monash University, Clayton 3800, Australia, and stephanie.gras@monash.edu.
Peter A van VeelenFrom the Departments of Immunohematology and Blood Transfusion and p.a.van_veelen@lumc.nl.
Institute of Haematology and Blood Transfusion · CZLeiden University Medical Center · NLARC Centre of Excellence in Advanced Molecular Imaging · AUMonash University · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Human leukocyte antigen (HLA) class I molecules generally present peptides (p) of 8 to 11 amino acids (aa) in length. Although an increasing number of examples with lengthy (>11 aa) peptides, presented mostly by HLA-B alleles, have been reported. Here we characterize HLA-A*02:01 restricted, in addition to the HLA-B*0702 and HLA-B*4402 restricted, lengthy peptides (>11 aa) arising from the B-cell ligandome. We analyzed a number of 15-mer peptides presented by HLA-A*02:01, and confirmed pHLA-I formation by HLA folding and thermal stability assays. Surprisingly the binding affinity and stability of the 15-mer epitopes in complex with HLA-A*02:01 were comparable with the values observed for canonical length (8 to 11 aa) HLA-A*02:01-restricted peptides. We solved the structures of two 15-mer epitopes in complex with HLA-A*02:01, within which the peptides adopted distinct super-bulged conformations. Moreover, we demonstrate that T-cells can recognize the 15-mer peptides in the context of HLA-A*02:01, indicating that these 15-mer peptides represent immunogenic ligands. Collectively, our data expand our understanding of longer epitopes in the context of HLA-I, highlighting that they are not limited to the HLA-B family, but can bind the ubiquitous HLA-A*02:01 molecule, and play an important role in T-cell immunity.

Indexed as

Cell LineCrystallography, X-RayEpitopes, T-LymphocyteFlow CytometryHLA-A2 AntigenHLA-B7 AntigenHumansMass SpectrometryPeptidesProtein ConformationEpitopes, T-LymphocyteHLA-A*02:01 antigenHLA-A2 AntigenHLA-B*07:02 antigenHLA-B7 AntigenPeptidesCrystallographyHLA-A*02:01Human Leukocyte Antigen Class IImmunologyMass Spectrometry (MS)Peptide ConformationPeptidesPeptidomicsT-cell Immunity

Identifiers

PMID25505266
PMCPMC4317018
OpenAlexW2020739249

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.