Evidence map›Paper›PMID 25505247›Full record

ArticleThe Journal of biological chemistry2015

Biophysical studies on interactions and assembly of full-size E3 ubiquitin ligase: suppressor of cytokine signaling 2 (SOCS2)-elongin BC-cullin 5-ring box protein 2 (RBX2).

Emil Bulatov, Esther M Martin, Sneha Chatterjee, Axel Knebel, Satoko Shimamura, Albert Konijnenberg, Clare Johnson, Nico Zinn, Paola Grandi, Frank Sobott and 1 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. E3 Ligase Ligands for PROTACs: How They Were Found and How to Discover New Ones.SLAS discovery : advancing life sciences R & D · 2021
    Review
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. [The Role of SOCS in the Development of Tumors].Zhongguo fei ai za zhi = Chinese journal of lung cancer · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Emil BulatovFrom the Division of Biological Chemistry and Drug Discovery, College of Life Sciences, and the Department of Chemistry, University of Cambridge, Cambridge CB2 1EW, United Kingdom.
Esther M Martinthe Department of Chemistry, University of Antwerp, 2020 Antwerp, Belgium, and.
Sneha Chatterjeethe Department of Chemistry, University of Antwerp, 2020 Antwerp, Belgium, and.
Axel Knebelthe Medical Research Council Phosphorylation and Ubiquitylation Unit, College of Life Sciences, Sir James Black Center, University of Dundee, Dundee DD1 5EH, Scotland, United Kingdom.
Satoko ShimamuraCellzome GmbH, Meyerhofstrasse 1, 69117 Heidelberg, Germany.
Albert Konijnenbergthe Department of Chemistry, University of Antwerp, 2020 Antwerp, Belgium, and.
Clare Johnsonthe Medical Research Council Phosphorylation and Ubiquitylation Unit, College of Life Sciences, Sir James Black Center, University of Dundee, Dundee DD1 5EH, Scotland, United Kingdom.
Nico ZinnCellzome GmbH, Meyerhofstrasse 1, 69117 Heidelberg, Germany.
Paola GrandiCellzome GmbH, Meyerhofstrasse 1, 69117 Heidelberg, Germany.
Frank Sobottthe Department of Chemistry, University of Antwerp, 2020 Antwerp, Belgium, and.
Alessio CiulliFrom the Division of Biological Chemistry and Drug Discovery, College of Life Sciences, and the Department of Chemistry, University of Cambridge, Cambridge CB2 1EW, United Kingdom, a.ciulli@dundee.ac.uk.
University of Antwerp · BEUniversity of Cambridge · GBMRC Protein Phosphorylation and Ubiquitylation Unit · GBUniversity of Dundee · GB

Funding

Biotechnology and Biological Sciences Research Council BB/G023123/1European Research Council 311460Wellcome Trust 100476/Z/12/Z
6 · The paper itself

Abstract

The multisubunit cullin RING E3 ubiquitin ligases (CRLs) target post-translationally modified substrates for ubiquitination and proteasomal degradation. The suppressors of cytokine signaling (SOCS) proteins play important roles in inflammatory processes, diabetes, and cancer and therefore represent attractive targets for therapeutic intervention. The SOCS proteins, among their other functions, serve as substrate receptors of CRL5 complexes. A member of the CRL family, SOCS2-EloBC-Cul5-Rbx2 (CRL5(SOCS2)), binds phosphorylated growth hormone receptor as its main substrate. Here, we demonstrate that the components of CRL5(SOCS2) can be specifically pulled from K562 human cell lysates using beads decorated with phosphorylated growth hormone receptor peptides. Subsequently, SOCS2-EloBC and full-length Cul5-Rbx2, recombinantly expressed in Escherichia coli and in Sf21 insect cells, respectively, were used to reconstitute neddylated and unneddylated CRL5(SOCS2) complexes in vitro. Finally, diverse biophysical methods were employed to study the assembly and interactions within the complexes. Unlike other E3 ligases, CRL5(SOCS2) was found to exist in a monomeric state as confirmed by size exclusion chromatography with inline multiangle static light scattering and native MS. Affinities of the protein-protein interactions within the multisubunit complex were measured by isothermal titration calorimetry. A structural model for full-size neddylated and unneddylated CRL5(SOCS2) complexes is supported by traveling wave ion mobility mass spectrometry data.

Indexed as

Protein ConformationCullin ProteinsElonginHumansK562 CellsMass SpectrometryModels, MolecularNEDD8 ProteinProtein BindingSuppressor of Cytokine Signaling ProteinsTranscription FactorsUbiquitinationUbiquitin-Protein LigasesUbiquitinsCUL5 protein, humanCullin ProteinsElonginNEDD8 ProteinNEDD8 protein, humanRNF7 protein, humanSOCS2 protein, humanSuppressor of Cytokine Signaling ProteinsTranscription FactorsUbiquitin-Protein LigasesUbiquitinsBiophysicsCullinE3 Ubiquitin LigaseIsothermal Titration Calorimetry (ITC)Mass Spectrometry (MS)Post-translational Modification (PTM)Protein AssemblyProtein ComplexProtein-Protein Interaction

Identifiers

PMID25505247
PMCPMC4326827
OpenAlexW2038542011

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.