Evidence map›Paper›PMID 25505149›Full record

ArticleBiology open2014

Computer simulations of the mouse spermatogenic cycle.

Debjit Ray, Philip B Pitts, Cathryn A Hogarth, Leanne S Whitmore, Michael D Griswold, Ping Ye

Abstract read
In one paragraph

Article in Biology open, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
  2. Maca (Frontiers in pharmacology · 2022
    Pooled it
  3. Prevention of seminal vesicle damage byPharmaceutical biology · 2023
    Article
  4. Protective effects of ThaiJournal of traditional and complementary medicine · 2022
    Article
  5. Review
  6. Article
  7. Article
  8. Does Abatacept Induce Testicular Toxicity?Archives of rheumatology · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Debjit RaySchool of Molecular Biosciences, Washington State University, PO Box 647520, Pullman, WA 99164, USA Biological Systems Engineering, Washington State University, Pullman, WA 99164, USA.
Philip B PittsSchool of Molecular Biosciences, Washington State University, PO Box 647520, Pullman, WA 99164, USA School of Electrical Engineering and Computer Science, Washington State University, Pullman, WA 99164, USA.
Cathryn A HogarthSchool of Molecular Biosciences, Washington State University, PO Box 647520, Pullman, WA 99164, USA.
Leanne S WhitmoreSchool of Molecular Biosciences, Washington State University, PO Box 647520, Pullman, WA 99164, USA.
Michael D GriswoldSchool of Molecular Biosciences, Washington State University, PO Box 647520, Pullman, WA 99164, USA.
Ping YeSchool of Molecular Biosciences, Washington State University, PO Box 647520, Pullman, WA 99164, USA pye@wsu.edu.

Funding

Spermatogonial Stem Cell Self-Renewal and DifferentiationU54HD042454 · NICHD · UNIVERSITY OF WASHINGTON · PI PAGE, STEPHANIE T · 2002 to 2016
$26.9M
TRAINING IN BIOTECHNOLOGY: EMPHASIS ON PROTEIN CHEMISTRYT32GM008336 · NIGMS · WASHINGTON STATE UNIVERSITY · PI CALL, DOUGLAS R. · 1989 to 2023
$8.9M
Computer simulations of the mouse spermatogenic cycleR03HD079723 · NICHD · WASHINGTON STATE UNIVERSITY · PI YE, PING · 2014 to 2015
$143k
NICHD NIH HHS R03 HD079723NICHD NIH HHS U54 HD042454NIGMS NIH HHS T32 GM008336
6 · The paper itself

Abstract

The spermatogenic cycle describes the periodic development of germ cells in the testicular tissue. The temporal-spatial dynamics of the cycle highlight the unique, complex, and interdependent interaction between germ and somatic cells, and are the key to continual sperm production. Although understanding the spermatogenic cycle has important clinical relevance for male fertility and contraception, there are a number of experimental obstacles. For example, the lengthy process cannot be visualized through dynamic imaging, and the precise action of germ cells that leads to the emergence of testicular morphology remains uncharacterized. Here, we report an agent-based model that simulates the mouse spermatogenic cycle on a cross-section of the seminiferous tubule over a time scale of hours to years, while considering feedback regulation, mitotic and meiotic division, differentiation, apoptosis, and movement. The computer model is able to elaborate the germ cell dynamics in a time-lapse movie format, allowing us to trace individual cells as they change state and location. More importantly, the model provides mechanistic understanding of the fundamentals of male fertility, namely how testicular morphology and sperm production are achieved. By manipulating cellular behaviors either individually or collectively in silico, the model predicts causal events for the altered arrangement of germ cells upon genetic or environmental perturbations. This in silico platform can serve as an interactive tool to perform long-term simulation and to identify optimal approaches for infertility treatment and contraceptive development.

Indexed as

Agent-based modelGerm cellMouseSimulationSpermatogenesisSpermatogenic cycle

Identifiers

PMID25505149
PMCPMC4295161

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.