Evidence map›Paper›PMID 25503687›Full record

ArticleScientific reports2014

Survival analysis of infected mice reveals pathogenic variations in the genome of avian H1N1 viruses.

Zeynep A Koçer, Yiping Fan, Robert Huether, John Obenauer, Richard J Webby, Jinghui Zhang, Robert G Webster, Gang Wu

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 16 citations in OpenAlex.

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  11. Molecular basis of mammalian transmissibility of avian H1N1 influenza viruses and their pandemic potential.Proceedings of the National Academy of Sciences of the United States of America · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Zeynep A KoçerDepartment of Infectious Diseases, Division of Virology, St. Jude Children's Research Hospital, Memphis, Tennessee, 38105, United States.
Yiping FanDepartment of Computational Biology, St. Jude Children's Research Hospital, Memphis, Tennessee, 38105, United States.
Robert HuetherDepartment of Computational Biology, St. Jude Children's Research Hospital, Memphis, Tennessee, 38105, United States.
John ObenauerDepartment of Computational Biology, St. Jude Children's Research Hospital, Memphis, Tennessee, 38105, United States.
Richard J WebbyDepartment of Infectious Diseases, Division of Virology, St. Jude Children's Research Hospital, Memphis, Tennessee, 38105, United States.
Jinghui ZhangDepartment of Computational Biology, St. Jude Children's Research Hospital, Memphis, Tennessee, 38105, United States.
Robert G WebsterDepartment of Infectious Diseases, Division of Virology, St. Jude Children's Research Hospital, Memphis, Tennessee, 38105, United States.
Gang WuDepartment of Computational Biology, St. Jude Children's Research Hospital, Memphis, Tennessee, 38105, United States.
St. Jude Children's Research Hospital · US

Funding

Viral Vector Technology (VVTSR)P30CA021765 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI CHARLES ROBERTS · 1985 to 2026
$166.9M
NCI NIH HHS P30 CA021765NIAID NIH HHS HHSN266200700005CPHS HHS HHSN266200700005C
6 · The paper itself

Abstract

Most influenza pandemics have been caused by H1N1 viruses of purely or partially avian origin. Here, using Cox proportional hazard model, we attempt to identify the genetic variations in the whole genome of wild-type North American avian H1N1 influenza A viruses that are associated with their virulence in mice by residue variations, host origins of virus (Anseriformes-ducks or Charadriiformes-shorebirds), and host-residue interactions. In addition, through structural modeling, we predicted that several polymorphic sites associated with pathogenicity were located in structurally important sites, especially in the polymerase complex and NS genes. Our study introduces a new approach to identify pathogenic variations in wild-type viruses circulating in the natural reservoirs and ultimately to understand their infectious risks to humans as part of risk assessment efforts towards the emergence of future pandemic strains.

Indexed as

AnimalsCharadriiformesChick EmbryoDisease ReservoirsDucksInfluenza A Virus, H1N1 SubtypeInfluenza in BirdsMice, Inbred DBAMutation, MissensePolymorphism, GeneticProportional Hazards ModelsProteomeViral ProteinsVirulenceProteomeViral Proteins

Identifiers

PMID25503687
PMCPMC4264002
OpenAlexW1973353940

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.