Evidence map›Paper›PMID 25503565›Full record

ArticleNature cell biology2015

Identification of nuclear hormone receptor pathways causing insulin resistance by transcriptional and epigenomic analysis.

Sona Kang, Linus T Tsai, Yiming Zhou, Adam Evertts, Su Xu, Michael J Griffin, Robbyn Issner, Holly J Whitton, Benjamin A Garcia, Charles B Epstein and 2 more

Open access · greenAbstract read
In one paragraph

Article in Nature cell biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
4.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 72 citations in OpenAlex.

  1. Trial
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  7. An improvedAdipocyte · 2024
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  13. Time of day determines postexercise metabolism in mouse adipose tissue.Proceedings of the National Academy of Sciences of the United States of America · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 1 country.

Sona KangDivision of Endocrinology, Beth Israel Deaconess Medical Center, Boston, Massachusetts 02215, USA.
Linus T TsaiDivision of Endocrinology, Beth Israel Deaconess Medical Center, Boston, Massachusetts 02215, USA.
Yiming ZhouDivision of Endocrinology, Beth Israel Deaconess Medical Center, Boston, Massachusetts 02215, USA.
Adam EverttsDepartment of Molecular Biology, Princeton University, Princeton, New Jersey 08544, USA.
Su XuDivision of Endocrinology, Beth Israel Deaconess Medical Center, Boston, Massachusetts 02215, USA.
Michael J GriffinDivision of Endocrinology, Beth Israel Deaconess Medical Center, Boston, Massachusetts 02215, USA.
Robbyn IssnerBroad Institute, Cambridge, Massachusetts 02142, USA.
Holly J WhittonBroad Institute, Cambridge, Massachusetts 02142, USA.
Benjamin A GarciaDepartment of Biochemistry and Biophysics, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA.
Charles B EpsteinBroad Institute, Cambridge, Massachusetts 02142, USA.
Tarjei S MikkelsenBroad Institute, Cambridge, Massachusetts 02142, USA.
Evan D Rosen1] Division of Endocrinology, Beth Israel Deaconess Medical Center, Boston, Massachusetts 02215, USA [2] Broad Institute, Cambridge, Massachusetts 02142, USA [3] Harvard Medical School, Boston, Massachusetts 02215, USA.
Beth Israel Deaconess Medical Center · USBroad Institute · USHarvard University · USPrinceton University · USUniversity of Pennsylvania · US

Funding

INTEGRATED ENDOCRINE &METABOLIC RESEARCH TRAININGT32DK007516 · NIDDK · BETH ISRAEL DEACONESS MEDICAL CENTER · PI BARBARA B. KAHN · 1986 to 2026
$6.8M
REGULATION OF NUTRIENT HOMEOSTASIS BY IRF4R01DK085171 · NIDDK · BETH ISRAEL DEACONESS MEDICAL CENTER · PI ROSEN, EVAN D · 2010 to 2018
$3.7M
Epigenomics of Human Insulin ResistanceR01DK087092 · NIDDK · BETH ISRAEL DEACONESS MEDICAL CENTER · PI ROSEN, EVAN D · 2009 to 2013
$3.3M
Novel Methodology for Quantitative High-throughput Cancer EpigeneticsDP2OD007447 · OD · UNIVERSITY OF PENNSYLVANIA · PI GARCIA, BENJAMIN A · 2010 to 2010
$2.4M
NIDDK NIH HHS R01 DK085171NIDDK NIH HHS R01 DK087092NIDDK NIH HHS T32 DK007516NIEHS NIH HHS R01 ES017690NIH HHS DP2 OD007447NIH HHS DP2OD007447
6 · The paper itself

Abstract

Insulin resistance is a cardinal feature of Type 2 diabetes (T2D) and a frequent complication of multiple clinical conditions, including obesity, ageing and steroid use, among others. How such a panoply of insults can result in a common phenotype is incompletely understood. Furthermore, very little is known about the transcriptional and epigenetic basis of this disorder, despite evidence that such pathways are likely to play a fundamental role. Here, we compare cell autonomous models of insulin resistance induced by the cytokine tumour necrosis factor-α or by the steroid dexamethasone to construct detailed transcriptional and epigenomic maps associated with cellular insulin resistance. These data predict that the glucocorticoid receptor and vitamin D receptor are common mediators of insulin resistance, which we validate using gain- and loss-of-function studies. These studies define a common transcriptional and epigenomic signature in cellular insulin resistance enabling the identification of pathogenic mechanisms.

Indexed as

3T3 CellsAdipogenesisAdipose TissueAnimalsBase SequenceBiological TransportCell LineDexamethasoneDiabetes Mellitus, Type 2EpigenomicsFemaleHigh-Throughput Nucleotide SequencingHistonesInsulinInsulin ResistanceMaleDexamethasoneHistonesInsulinReceptors, CalcitriolReceptors, GlucocorticoidRela protein, mouseTranscription Factor RelATumor Necrosis Factor-alpha

Identifiers

PMID25503565
PMCPMC4281178
OpenAlexW2060090203

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.