Evidence map›Paper›PMID 25503367›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2014

Quantum delocalization of protons in the hydrogen-bond network of an enzyme active site.

Lu Wang, Stephen D Fried, Steven G Boxer, Thomas E Markland

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. The Q-AMOEBA (CF) Polarizable Potential.The journal of physical chemistry letters · 2025
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Clusterization-Triggered Emission Enhanced by Energy Transfer in the Layered Metal Halide Hybrid Material (TET)The journal of physical chemistry. C, Nanomaterials and interfaces · 2023
    Article
  13. Directed proton transfer from FBiophysical reviews · 2023
    Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Lu WangDepartment of Chemistry, Stanford University, Stanford, CA 94305.
Stephen D FriedDepartment of Chemistry, Stanford University, Stanford, CA 94305.
Steven G BoxerDepartment of Chemistry, Stanford University, Stanford, CA 94305.
Thomas E MarklandDepartment of Chemistry, Stanford University, Stanford, CA 94305 tmarkland@stanford.edu.

Funding

NMR &CIDNP STUDIES OF MB MUTANTS &OLIGONUCLEOTIDE LOOPR01GM027738 · NIGMS · STANFORD UNIVERSITY · PI BOXER, STEVEN G. · 1985 to 2016
$4.3M
ELECTROSTATICS AND DYNAMICS IN MYOGLOBIN MUTANTSR37GM027738 · NIGMS · STANFORD UNIVERSITY · PI BOXER, STEVEN G. · 1994 to 2003
$1.2M
NIGMS NIH HHS GM27738NIGMS NIH HHS R01 GM027738NIGMS NIH HHS R37 GM027738
6 · The paper itself

Abstract

Enzymes use protein architectures to create highly specialized structural motifs that can greatly enhance the rates of complex chemical transformations. Here, we use experiments, combined with ab initio simulations that exactly include nuclear quantum effects, to show that a triad of strongly hydrogen-bonded tyrosine residues within the active site of the enzyme ketosteroid isomerase (KSI) facilitates quantum proton delocalization. This delocalization dramatically stabilizes the deprotonation of an active-site tyrosine residue, resulting in a very large isotope effect on its acidity. When an intermediate analog is docked, it is incorporated into the hydrogen-bond network, giving rise to extended quantum proton delocalization in the active site. These results shed light on the role of nuclear quantum effects in the hydrogen-bond network that stabilizes the reactive intermediate of KSI, and the behavior of protons in biological systems containing strong hydrogen bonds.

Indexed as

Bacterial ProteinsCatalytic DomainHydrogen BondingPseudomonas putidaSteroid IsomerasesBacterial ProteinsSteroid Isomerasesab initio path integral molecular dynamicsenzymehydrogen bondingnuclear quantum effectsproton delocalization

Identifiers

PMID25503367
PMCPMC4284547

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.