Evidence map›Paper›PMID 25502654›Full record

ArticlePLoS pathogens2014

Crystal structure of calcium binding protein-5 from Entamoeba histolytica and its involvement in initiation of phagocytosis of human erythrocytes.

Sanjeev Kumar, Saima Aslam, Mohit Mazumder, Pradeep Dahiya, Aruna Murmu, Babu A Manjasetty, Rana Zaidi, Alok Bhattacharya, S Gourinath

Erratum issuedAbstract read
In one paragraph

Article in PLoS pathogens, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Molecular interplays of theFrontiers in cellular and infection microbiology · 2022
    Review
  5. Review
  6. Review
  7. Article
  8. Uncovering the Cyclic AMP Signaling Pathway of the Protozoan ParasiteFrontiers in cellular and infection microbiology · 2020
    Article
  9. Revisiting Drug Development Against the Neglected Tropical Disease, Amebiasis.Frontiers in cellular and infection microbiology · 2020
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Sanjeev KumarSchool of Life Sciences, Jawaharlal Nehru University, New Delhi, India; Department of Biochemistry, Jamia Hamdard, New Delhi, India.
Saima AslamSchool of Life Sciences, Jawaharlal Nehru University, New Delhi, India.
Mohit MazumderSchool of Life Sciences, Jawaharlal Nehru University, New Delhi, India.
Pradeep DahiyaPlant Mediator Lab, National Institute of Plant & Genome Research, New Delhi, Delhi, India.
Aruna MurmuSchool of Life Sciences, Jawaharlal Nehru University, New Delhi, India.
Babu A ManjasettyEuropean Molecular Biology Laboratory, Grenoble Outstation, France; Unit for Virus Host-Cell Interactions, Université Grenoble Alpes - EMBL-CNRS, France.
Rana ZaidiDepartment of Biochemistry, Jamia Hamdard, New Delhi, India.
Alok BhattacharyaSchool of Life Sciences, Jawaharlal Nehru University, New Delhi, India.
S GourinathSchool of Life Sciences, Jawaharlal Nehru University, New Delhi, India.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Entamoeba histolytica is the etiological agent of human amoebic colitis and liver abscess, and causes a high level of morbidity and mortality worldwide, particularly in developing countries. There are a number of studies that have shown a crucial role for Ca2+ and its binding protein in amoebic biology. EhCaBP5 is one of the EF hand calcium-binding proteins of E. histolytica. We have determined the crystal structure of EhCaBP5 at 1.9 Å resolution in the Ca2+-bound state, which shows an unconventional mode of Ca2+ binding involving coordination to a closed yet canonical EF-hand motif. Structurally, EhCaBP5 is more similar to the essential light chain of myosin than to Calmodulin despite its somewhat greater sequence identity with Calmodulin. This structure-based analysis suggests that EhCaBP5 could be a light chain of myosin. Surface plasmon resonance studies confirmed this hypothesis, and in particular showed that EhCaBP5 interacts with the IQ motif of myosin 1B in calcium independent manner. It also appears from modelling of the EhCaBP5-IQ motif complex that EhCaBP5 undergoes a structural change in order to bind the IQ motif of myosin. This specific interaction was further confirmed by the observation that EhCaBP5 and myosin 1B are colocalized in E. histolytica during phagocytic cup formation. Immunoprecipitation of EhCaBP5 from total E. histolytica cellular extract also pulls out myosin 1B and this interaction was confirmed to be Ca2+ independent. Confocal imaging of E. histolytica showed that EhCaBP5 and myosin 1B are part of phagosomes. Overexpression of EhCaBP5 increases slight rate (∼20%) of phagosome formation, while suppression reduces the rate drastically (∼55%). Taken together, these experiments indicate that EhCaBP5 is likely to be the light chain of myosin 1B. Interestingly, EhCaBP5 is not present in the phagosome after its formation suggesting EhCaBP5 may be playing a regulatory role.

Indexed as

Amino Acid MotifsCalcium-Binding ProteinsCalmodulinCrystallographyDown-RegulationEntamoeba histolyticaEntamoebiasisErythrocytesHumansMyosinsPhagocytosisPhagosomesCalcium-Binding ProteinsCalmodulinMyosins

Identifiers

PMID25502654
PMCPMC4263763

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.