Evidence map›Paper›PMID 25502441›Full record

ArticlePloS one2014

Phenolic compounds and expression of 4CL genes in silver birch clones and Pt4CL1a lines.

Suvi Sutela, Terhi Hahl, Heidi Tiimonen, Tuija Aronen, Tiina Ylioja, Tapio Laakso, Pekka Saranpää, Vincent Chiang, Riitta Julkunen-Tiitto, Hely Häggman

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.3field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Relationship between the Phenylpropanoid Pathway and Dwarfism ofInternational journal of molecular sciences · 2021
    Article
  5. Plant Secondary Metabolites with an Overview ofInternational journal of molecular sciences · 2021
    Review
  6. Article
  7. Article
  8. Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Suvi SutelaDepartment of Biology, University of Oulu, Oulu, Finland.
Terhi HahlDepartment of Biology, University of Oulu, Oulu, Finland.
Heidi TiimonenThe Finnish Border Guard, Border and Coast Guard Academy, Imatra, Finland.
Tuija AronenFinnish Forest Research Institute, Eastern Finland Regional Unit (Punkaharju Unit), Punkaharju, Finland.
Tiina YliojaFinnish Forest Research Institute, Southern Finland Regional Unit (Vantaa Unit), Vantaa, Finland.
Tapio LaaksoFinnish Forest Research Institute, Southern Finland Regional Unit (Vantaa Unit), Vantaa, Finland.
Pekka SaranpääFinnish Forest Research Institute, Southern Finland Regional Unit (Vantaa Unit), Vantaa, Finland.
Vincent ChiangForest Biotechnology Group, Department of Forestry and Environmental Resources, North Carolina State University, Raleigh, North Carolina, United States of America.
Riitta Julkunen-TiittoDepartment of Biology, University of Eastern Finland, Joensuu, Finland.
Hely HäggmanDepartment of Biology, University of Oulu, Oulu, Finland.
University of Oulu · FINorth Carolina State University · USUniversity of Eastern Finland · FI

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A small multigene family encodes 4-coumarate:CoA ligases (4CLs) catalyzing the CoA ligation of hydroxycinnamic acids, a branch point step directing metabolites to a flavonoid or monolignol pathway. In the present study, we examined the effect of antisense Populus tremuloides 4CL (Pt4CL1) to the lignin and soluble phenolic compound composition of silver birch (Betula pendula) Pt4CL1a lines in comparison with non-transgenic silver birch clones. The endogenous expression of silver birch 4CL genes was recorded in the stems and leaves and also in leaves that were mechanically injured. In one of the transgenic Pt4CL1a lines, the ratio of syringyl (S) and guaiacyl (G) lignin units was increased. Moreover, the transcript levels of putative silver birch 4CL gene (Bp4CL1) were reduced and contents of cinnamic acid derivatives altered. In the other two Pt4CL1a lines changes were detected in the level of individual phenolic compounds. However, considerable variation was found in the transcript levels of silver birch 4CLs as well as in the concentration of phenolic compounds among the transgenic lines and non-transgenic clones. Wounding induced the expression of Bp4CL1 and Bp4CL2 in leaves in all clones and transgenic lines, whereas the transcript levels of Bp4CL3 and Bp4CL4 remained unchanged. Moreover, minor changes were detected in the concentrations of phenolic compounds caused by wounding. As an overall trend the wounding decreased the flavonoid content in silver birches and increased the content of soluble condensed tannins. The results indicate that by reducing the Bp4CL1 transcript levels lignin composition could be modified. However, the alterations found among the Pt4CL1a lines and the non-transgenic clones were within the natural variation of silver birches, as shown in the present study by the clonal differences in the transcripts levels of 4CL genes, soluble phenolic compounds and condensed tannins.

Indexed as

Gene Expression Regulation, PlantBetulaBiomechanical PhenomenaCloning, MolecularCoenzyme A LigasesPhenolsPlant LeavesPlants, Genetically ModifiedPopulusRNA, MessengerSolubility4-coumarate-CoA ligaseCoenzyme A LigasesPhenolsRNA, Messenger

Identifiers

PMID25502441
PMCPMC4263613
OpenAlexW1978812155

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.