Evidence map›Paper›PMID 25502182›Full record

ArticleClinical chemistry2015

Newborn blood spot screening test using multiplexed real-time PCR to simultaneously screen for spinal muscular atrophy and severe combined immunodeficiency.

Jennifer L Taylor, Francis K Lee, Golriz Khadem Yazdanpanah, John F Staropoli, Mei Liu, John P Carulli, Chao Sun, Steven F Dobrowolski, W Harry Hannon, Robert F Vogt

Open access · bronzeAbstract readValidation Study
In one paragraph

Article in Clinical chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 82 citations in OpenAlex.

  1. Trial
  2. Review
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  6. Review
  7. Article
  8. Validation on the First-Tier Fully Automated High-ThroughputInternational journal of neonatal screening · 2025
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  16. First pilot study for newborn screening of severe T and B lymphopenias in ColombiaBiomedica : revista del Instituto Nacional de Salud · 2024
    Article
  17. Article
  18. Article
  19. T-cell receptor excision circles and postnatal cytomegalovirus infection in very low birth weight infants.Journal of perinatology : official journal of the California Perinatal Association · 2024
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Jennifer L TaylorNewborn Screening and Molecular Biology Branch, Division of Laboratory Sciences, Centers for Disease Control and Prevention, Atlanta, GA;
Francis K LeeNewborn Screening and Molecular Biology Branch, Division of Laboratory Sciences, Centers for Disease Control and Prevention, Atlanta, GA;
Golriz Khadem YazdanpanahNewborn Screening Translation Research Initiative, CDC Foundation, Atlanta, GA;
John F StaropoliGenetics and Genomics, Biogen Idec, Cambridge, MA;
Mei LiuGenetics and Genomics, Biogen Idec, Cambridge, MA;
John P CarulliGenetics and Genomics, Biogen Idec, Cambridge, MA;
Chao SunGenetics and Genomics, Biogen Idec, Cambridge, MA;
Steven F DobrowolskiDepartment of Pathology, University of Pittsburgh Medical Center, Pittsburgh, PA.
W Harry HannonNewborn Screening Translation Research Initiative, CDC Foundation, Atlanta, GA;
Robert F VogtNewborn Screening and Molecular Biology Branch, Division of Laboratory Sciences, Centers for Disease Control and Prevention, Atlanta, GA; rvogt@cdc.gov.
Biogen (United States) · USCenters for Disease Control and Prevention · USCDC Foundation · USUniversity of Pittsburgh Medical Center · US

Funding

Intramural CDC HHS CC999999
6 · The paper itself

Abstract

backgroundSpinal muscular atrophy (SMA) is a motor neuron disorder caused by the absence of a functional survival of motor neuron 1, telomeric (SMN1) gene. Type I SMA, a lethal disease of infancy, accounts for the majority of cases. Newborn blood spot screening (NBS) to detect severe combined immunodeficiency (SCID) has been implemented in public health laboratories in the last 5 years. SCID detection is based on real-time PCR assays to measure T-cell receptor excision circles (TREC), a byproduct of T-cell development. We modified a multiplexed real-time PCR TREC assay to simultaneously determine the presence or absence of the SMN1 gene from a dried blood spot (DBS) punch in a single reaction well.

methodAn SMN1 assay using a locked nucleic acid probe was initially developed with cell culture and umbilical cord blood (UCB) DNA extracts, and then integrated into the TREC assay. DBS punches were placed in 96-well arrays, washed, and amplified directly using reagents specific for TREC, a reference gene [ribonuclease P/MRP 30kDa subunit (RPP30)], and the SMN1 gene. The assay was tested on DBS made from UCB units and from peripheral blood samples of SMA-affected individuals and their family members.

resultsDBS made from SMA-affected individuals showed no SMN1-specific amplification, whereas DBS made from all unaffected carriers and UCB showed SMN1 amplification above a well-defined threshold. TREC and RPP30 content in all DBS were within the age-adjusted expected range.

conclusionsSMA caused by the absence of SMN1 can be detected from the same DBS punch used to screen newborns for SCID.

Indexed as

AdolescentAdultChildChild, PreschoolDNADried Blood Spot TestingGenetic TestingHumansInfantInfant, NewbornMiddle AgedMuscular Atrophy, SpinalReal-Time Polymerase Chain ReactionReceptors, Antigen, T-CellSevere Combined ImmunodeficiencySurvival of Motor Neuron 1 ProteinDNAReceptors, Antigen, T-CellSurvival of Motor Neuron 1 Protein

Identifiers

PMID25502182
PMCPMC7906865
OpenAlexW2134678130

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.