Evidence map›Paper›PMID 25501974›Full record

ArticlePloS one2014

In vitro reconstitution of yeast tUTP/UTP A and UTP B subcomplexes provides new insights into their modular architecture.

Gisela Pöll, Shuang Li, Uli Ohmayer, Thomas Hierlmeier, Philipp Milkereit, Jorge Perez-Fernandez

Abstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Ribosome assembly coming into focus.Nature reviews. Molecular cell biology · 2019
    Review
  6. Article
  7. Review
  8. The SSU processome interactome inRNA (New York, N.Y.) · 2018
    Article
  9. Article
  10. Article
  11. Article
  12. Interaction network of the ribosome assembly machinery from a eukaryotic thermophile.Protein science : a publication of the Protein Society · 2017
    Article
  13. Article
  14. Review
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Gisela PöllLehrstuhl für Biochemie III, Universität Regensburg, Regensburg, Germany.
Shuang LiLehrstuhl für Biochemie III, Universität Regensburg, Regensburg, Germany.
Uli OhmayerLehrstuhl für Biochemie III, Universität Regensburg, Regensburg, Germany.
Thomas HierlmeierLehrstuhl für Biochemie III, Universität Regensburg, Regensburg, Germany.
Philipp MilkereitLehrstuhl für Biochemie III, Universität Regensburg, Regensburg, Germany.
Jorge Perez-FernandezLehrstuhl für Biochemie III, Universität Regensburg, Regensburg, Germany.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Eukaryotic ribosome biogenesis is a multistep process involving more than 150 biogenesis factors, which interact transiently with pre-ribosomal particles to promote their maturation. Some of these auxiliary proteins have been isolated in complexes found separate from the ribosomal environment. Among them, are 3 large UTP subcomplexes containing 6 or 7 protein subunits which are involved in the early steps of ribosome biogenesis. The composition of the UTP subcomplexes and the network of binary interactions between protein subunits have been analyzed previously. To obtain further insights into the structural and biochemical properties of UTP subcomplexes, we established a heterologous expression system to allow reconstitution of the yeast tUTP/UTP A and UTP B subcomplexes from their candidate subunits. The results of a series of reconstitution experiments involving different combinations of protein subunits are in good agreement with most of the previously observed binary interactions. Moreover, in combination with additional biochemical analyses, several stable building blocks of the UTP subcomplexes were identified. Based on these findings, we present a refined model of the tUTP/UTP A and UTP B architecture.

Indexed as

Organelle BiogenesisAnimalsBlotting, WesternCells, CulturedInsectaIn Vitro TechniquesMultiprotein ComplexesOligonucleotidesRibonucleoproteinsRibosomesSaccharomyces cerevisiae ProteinsTandem Mass SpectrometryUridine TriphosphateYeastsMultiprotein ComplexesOligonucleotidesRibonucleoproteinsSaccharomyces cerevisiae ProteinsUridine Triphosphate

Identifiers

PMID25501974
PMCPMC4264851

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.