Evidence map›Paper›PMID 25501817›Full record

ArticleJournal of cell science2015

Nanoscale histone localization in live cells reveals reduced chromatin mobility in response to DNA damage.

Jing Liu, Pierre-Alexandre Vidi, Sophie A Lelièvre, Joseph M K Irudayaraj

Abstract read
In one paragraph

Article in Journal of cell science, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Multi-Scale Imaging of the Dynamic Organization of Chromatin.International journal of molecular sciences · 2023
    Review
  6. Article
  7. DNA damage reduces heterogeneity and coherence of chromatin motions.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  8. Review
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Jing LiuDepartment of Agricultural and Biological Engineering, Bindley Bioscience Center, Purdue University, West Lafayette, IN 47907, USA.
Pierre-Alexandre VidiDepartment of Basic Medical Sciences, Purdue University, West Lafayette, IN 47907, USA pvidi@purdue.edu josephi@purdue.edu.
Sophie A LelièvreDepartment of Basic Medical Sciences, Purdue University, West Lafayette, IN 47907, USA Purdue Center for Cancer Research, Purdue University, West Lafayette, IN 47907, USA.
Joseph M K IrudayarajDepartment of Agricultural and Biological Engineering, Bindley Bioscience Center, Purdue University, West Lafayette, IN 47907, USA Purdue Center for Cancer Research, Purdue University, West Lafayette, IN 47907, USA pvidi@purdue.edu josephi@purdue.edu.

Funding

Interplay Between Tissue Architecture and Nuclear Organization in the DNA DamageR00CA163957 · NCI · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI VIDI, PIERRE-ALEXANDRE · 2015 to 2017
$747k
Interplay Between Tissue Architecture and Nuclear Organization in the DNA DamageK99CA163957 · NCI · PURDUE UNIVERSITY · PI VIDI, PIERRE-ALEXANDRE · 2012 to 2013
$180k
NCI NIH HHS K99 CA163957NCI NIH HHS K99CA163957NCI NIH HHS R00 CA163957
6 · The paper itself

Abstract

Nuclear functions including gene expression, DNA replication and genome maintenance intimately rely on dynamic changes in chromatin organization. The movements of chromatin fibers might play important roles in the regulation of these fundamental processes, yet the mechanisms controlling chromatin mobility are poorly understood owing to methodological limitations for the assessment of chromatin movements. Here, we present a facile and quantitative technique that relies on photoactivation of GFP-tagged histones and paired-particle tracking to measure chromatin mobility in live cells. We validate the method by comparing live cells to ATP-depleted cells and show that chromatin movements in mammalian cells are predominantly energy dependent. We also find that chromatin diffusion decreases in response to DNA breaks induced by a genotoxic drug or by the ISceI meganuclease. Timecourse analysis after cell exposure to ionizing radiation indicates that the decrease in chromatin mobility is transient and precedes subsequent increased mobility. Future applications of the method in the DNA repair field and beyond are discussed.

Indexed as

Adenosine TriphosphateBleomycinCell Line, TumorChromatinChromatin Assembly and DisassemblyDNA Breaks, Double-StrandedDNA RepairGreen Fluorescent ProteinsHistonesHumansRadiation, IonizingUltraviolet RaysAdenosine TriphosphateBleomycinChromatinGreen Fluorescent ProteinsHistonesChromatin mobilityDNA damagePaired-particle tracking

Identifiers

PMID25501817
PMCPMC4311136

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.