Evidence map›Paper›PMID 25501485›Full record

ArticleApplied and environmental microbiology2015

Transcriptomic analysis of temperature responses of Aspergillus kawachii during barley koji production.

Taiki Futagami, Kazuki Mori, Shotaro Wada, Hiroko Ida, Yasuhiro Kajiwara, Hideharu Takashita, Kosuke Tashiro, Osamu Yamada, Toshiro Omori, Satoru Kuhara and 1 more

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In one paragraph

Article in Applied and environmental microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 37 citations in OpenAlex.

  1. Article
  2. Journal of fungi (Basel, Switzerland) · 2024
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  7. Membrane Traffic inJournal of fungi (Basel, Switzerland) · 2021
    Review
  8. Review
  9. Article
  10. Article
  11. Genome sequence of Aspergillus luchuensis NBRC 4314.DNA research : an international journal for rapid publication of reports on genes and genomes · 2016
    Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Taiki Futagami
Kazuki Mori
Shotaro Wada
Hiroko Ida
Yasuhiro Kajiwara
Hideharu Takashita
Kosuke Tashiro
Osamu Yamada
Toshiro Omori
Satoru Kuhara
Masatoshi Goto
Kyushu University · JPNational Research Institute of Brewing · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The koji mold Aspergillus kawachii is used for making the Japanese distilled spirit shochu. During shochu production, A. kawachii is grown in solid-state culture (koji) on steamed grains, such as rice or barley, to convert the grain starch to glucose and produce citric acid. During this process, the cultivation temperature of A. kawachii is gradually increased to 40 °C and is then lowered to 30 °C. This temperature modulation is important for stimulating amylase activity and the accumulation of citric acid. However, the effects of temperature on A. kawachii at the gene expression level have not been elucidated. In this study, we investigated the effect of solid-state cultivation temperature on gene expression for A. kawachii grown on barley. The results of DNA microarray and gene ontology analyses showed that the expression of genes involved in the glycerol, trehalose, and pentose phosphate metabolic pathways, which function downstream of glycolysis, was downregulated by shifting the cultivation temperature from 40 to 30 °C. In addition, significantly reduced expression of genes related to heat shock responses and increased expression of genes related with amino acid transport were also observed. These results suggest that solid-state cultivation at 40 °C is stressful for A. kawachii and that heat adaptation leads to reduced citric acid accumulation through activation of pathways branching from glycolysis. The gene expression profile of A. kawachii elucidated in this study is expected to contribute to the understanding of gene regulation during koji production and optimization of the industrially desirable characteristics of A. kawachii.

Indexed as

TranscriptomeAlcoholic BeveragesAspergillusCitric AcidFermentationFungal ProteinsGene Expression Regulation, FungalGlycolysisHordeumTemperatureCitric AcidFungal Proteins

Identifiers

PMID25501485
PMCPMC4309687
OpenAlexW2170471744

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.