Evidence map›Paper›PMID 25501352›Full record

ArticlePLoS genetics2014

Non-coding roX RNAs prevent the binding of the MSL-complex to heterochromatic regions.

Margarida L A Figueiredo, Maria Kim, Philge Philip, Anders Allgardsson, Per Stenberg, Jan Larsson

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
0.7field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
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  4. Article
  5. Dosage Compensation inInternational journal of molecular sciences · 2022
    Review
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  17. TheGenetics · 2018
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Margarida L A FigueiredoDepartment of Molecular Biology, Umeå University, Umeå, Sweden.
Maria KimDepartment of Molecular Biology, Umeå University, Umeå, Sweden.
Philge PhilipDepartment of Molecular Biology, Umeå University, Umeå, Sweden; Computational Life Science Cluster (CLiC), Umeå University, Umeå, Sweden.
Anders AllgardssonDepartment of Molecular Biology, Umeå University, Umeå, Sweden.
Per StenbergDepartment of Molecular Biology, Umeå University, Umeå, Sweden; Computational Life Science Cluster (CLiC), Umeå University, Umeå, Sweden.
Jan LarssonDepartment of Molecular Biology, Umeå University, Umeå, Sweden.
Umeå University · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Long non-coding RNAs contribute to dosage compensation in both mammals and Drosophila by inducing changes in the chromatin structure of the X-chromosome. In Drosophila melanogaster, roX1 and roX2 are long non-coding RNAs that together with proteins form the male-specific lethal (MSL) complex, which coats the entire male X-chromosome and mediates dosage compensation by increasing its transcriptional output. Studies on polytene chromosomes have demonstrated that when both roX1 and roX2 are absent, the MSL-complex becomes less abundant on the male X-chromosome and is relocated to the chromocenter and the 4th chromosome. Here we address the role of roX RNAs in MSL-complex targeting and the evolution of dosage compensation in Drosophila. We performed ChIP-seq experiments which showed that MSL-complex recruitment to high affinity sites (HAS) on the X-chromosome is independent of roX and that the HAS sequence motif is conserved in D. simulans. Additionally, a complete and enzymatically active MSL-complex is recruited to six specific genes on the 4th chromosome. Interestingly, our sequence analysis showed that in the absence of roX RNAs, the MSL-complex has an affinity for regions enriched in Hoppel transposable elements and repeats in general. We hypothesize that roX mutants reveal the ancient targeting of the MSL-complex and propose that the role of roX RNAs is to prevent the binding of the MSL-complex to heterochromatin.

Indexed as

AnimalsBase SequenceConserved SequenceDNA-Binding ProteinsDosage Compensation, GeneticDrosophila melanogasterDrosophila ProteinsFemaleHeterochromatinMaleNuclear ProteinsPolytene ChromosomesProtein BindingProtein TransportRepetitive Sequences, Nucleic AcidRNA, UntranslatedDNA-Binding ProteinsDrosophila ProteinsHeterochromatinmsl-1 protein, Drosophilamsl-2 protein, DrosophilaNuclear ProteinsRNA, UntranslatedTranscription Factors

Identifiers

PMID25501352
PMCPMC4263465
OpenAlexW1981872287

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.