Evidence map›Paper›PMID 25500566›Full record

ArticlePLoS genetics2014

A Cbx8-containing polycomb complex facilitates the transition to gene activation during ES cell differentiation.

Catherine Creppe, Anna Palau, Roberto Malinverni, Vanesa Valero, Marcus Buschbeck

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
3.6field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 64 citations in OpenAlex.

  1. Article
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  8. Review
  9. Critical Roles of Polycomb Repressive Complexes in Transcription and Cancer.International journal of molecular sciences · 2022
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Catherine CreppeInstitute of Predictive and Personalized Medicine of Cancer (IMPPC), Badalona, Barcelona, Spain.
Anna PalauInstitute of Predictive and Personalized Medicine of Cancer (IMPPC), Badalona, Barcelona, Spain.
Roberto MalinverniInstitute of Predictive and Personalized Medicine of Cancer (IMPPC), Badalona, Barcelona, Spain.
Vanesa ValeroInstitute of Predictive and Personalized Medicine of Cancer (IMPPC), Badalona, Barcelona, Spain.
Marcus BuschbeckInstitute of Predictive and Personalized Medicine of Cancer (IMPPC), Badalona, Barcelona, Spain.
Institute of Predictive and Personalized Medicine of Cancer · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Polycomb proteins play an essential role in maintaining the repression of developmental genes in self-renewing embryonic stem cells. The exact mechanism allowing the derepression of polycomb target genes during cell differentiation remains unclear. Our project aimed to identify Cbx8 binding sites in differentiating mouse embryonic stem cells. Therefore, we used a genome-wide chromatin immunoprecipitation of endogenous Cbx8 coupled to direct massive parallel sequencing (ChIP-Seq). Our analysis identified 171 high confidence peaks. By crossing our data with previously published microarray analysis, we show that several differentiation genes transiently recruit Cbx8 during their early activation. Depletion of Cbx8 partially impairs the transcriptional activation of these genes. Both interaction analysis, as well as chromatin immunoprecipitation experiments support the idea that activating Cbx8 acts in the context of an intact PRC1 complex. Prolonged gene activation results in eviction of PRC1 despite persisting H3K27me3 and H2A ubiquitination. The composition of PRC1 is highly modular and changes when embryonic stem cells commit to differentiation. We further demonstrate that the exchange of Cbx7 for Cbx8 is required for the effective activation of differentiation genes. Taken together, our results establish a function for a Cbx8-containing complex in facilitating the transition from a Polycomb-repressed chromatin state to an active state. As this affects several key regulatory differentiation genes this mechanism is likely to contribute to the robust execution of differentiation programs.

Indexed as

Cell DifferentiationTranscriptional ActivationAnimalsCells, CulturedChromatinChromatin ImmunoprecipitationEmbryonic Stem CellsGene DeletionHistonesMiceMitochondrial Membrane Transport ProteinsPolycomb-Group ProteinsPolycomb Repressive Complex 1Protein BindingProteomicsUbiquitinsCbx7 protein, mouseCbx8 protein, mouseChromatinchromatin conjugate protein A24HistonesMitochondrial Membrane Transport ProteinsPolycomb-Group ProteinsPolycomb Repressive Complex 1Ubiquitins

Identifiers

PMID25500566
PMCPMC4263398
OpenAlexW1985587850

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.