Evidence map›Paper›PMID 25500294›Full record

ArticleInfection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases2015

Molecular characterization of a new mosaic Simian Immunodeficiency Virus in a naturally infected tantalus monkey (Chlorocebus tantalus) from Cameroon: a challenge to the virus-host co-evolution of SIVagm in African green monkeys.

Ahidjo Ayouba, Richard Njouom, Julius Ebua Chia, Steve Ahuka-Mundeke, Anfumbom Kfutwah, Eitel Mpoudi Ngole, Eric Nerrienet, Eric Delaporte, Martine Peeters

Abstract read
In one paragraph

Article in Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.1field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Article
  3. Primate immunodeficiency virus classification and nomenclature: Review.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 6 institutions in 3 countries.

Ahidjo AyoubaUMI 233, IRD and University of Montpellier 1, Montpellier, France. Electronic address: ahidjo.ayouba@ird.fr.
Richard NjouomService de Virologie, Centre Pasteur du Cameroun, Yaoundé, Cameroon.
Julius Ebua ChiaVirology Laboratory CREMER/IMPM/IRD, Yaoundé, Cameroon.
Steve Ahuka-MundekeUMI 233, IRD and University of Montpellier 1, Montpellier, France.
Anfumbom KfutwahService de Virologie, Centre Pasteur du Cameroun, Yaoundé, Cameroon.
Eitel Mpoudi NgoleVirology Laboratory CREMER/IMPM/IRD, Yaoundé, Cameroon.
Eric NerrienetService de Virologie, Centre Pasteur du Cameroun, Yaoundé, Cameroon.
Eric DelaporteUMI 233, IRD and University of Montpellier 1, Montpellier, France.
Martine PeetersUMI 233, IRD and University of Montpellier 1, Montpellier, France; Institut de Biologie Computationnelle, Montpellier, France.
Centre Pasteur du Cameroun · CMInstitut de Recherches Médicales et d’Etudes des Plantes Médicinales · CMRecherches Translationnelles sur le VIH et les Maladies InfectieusesInstitut de Recherche pour le Développement · FRInstitut Pasteur du Cambodge · KHUniversité de Montpellier · FR

Funding

Natural SIV Reservoirs and Human Zoonotic RiskR01AI050529 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI HAHN, BEATRICE H · 2001 to 2022
$6.1M
Natural SIV Reservoirs and Human Zoonotic RiskR37AI050529 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI HAHN, BEATRICE H · 2008 to 2017
$5.7M
NIAID NIH HHS R01 AI050529NIAID NIH HHS R01 AI 50529NIAID NIH HHS R37 AI050529
6 · The paper itself

Abstract

African green monkeys (AGMs) represent the most widely distributed non-human primates species in Africa. SIVagm naturally infects four of the 6 AGMs species at high prevalence in a species-specific manner. To date, only limited information is available on molecular characteristics of SIVagm infecting Chlorocebus tantalus. Here, we characterized the full-length genome of a virus infecting a naturally infected captive C. tantalus from Cameroon by amplifying and sequencing sub-genomic PCR fragments. The isolate (SIVagmTAN-CM545) is 9923bp long and contained all canonical genes of a functional SIV. SIVagmTAN-CM545 showed a mosaic structure, with gag, pol, nef and accessory genes closely related to SIVagmSAB infecting Chlorocebus sabaeus monkeys from west Africa, and the env gene, closely related to SIVagmTAN infecting tantalus monkeys from Central Africa. Thus SIVagmTAN-CM545 is SIVagmSAB/SIVagmTAN recombinant. These unexpected findings suggest that the evolution of SIVagm is more complex than previously thought and warrant further studies.

Indexed as

AnimalsCameroonCercopithecidaeChlorocebus aethiopsDNA, ViralFemaleHost-Pathogen InteractionsMolecular Sequence DataPhylogenySimian Acquired Immunodeficiency SyndromeSimian Immunodeficiency VirusDNA, ViralAfrican green monkeysCameroonPhylogenySIV

Identifiers

PMID25500294
PMCPMC4680966
OpenAlexW2045680536

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.