Evidence map›Paper›PMID 25500192›Full record

ArticleCell host & microbe2015

Community behavior and spatial regulation within a bacterial microcolony in deep tissue sites serves to protect against host attack.

Kimberly M Davis, Sina Mohammadi, Ralph R Isberg

Abstract read
In one paragraph

Article in Cell host & microbe, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 81 papers.

0numbers the graph read from it
0cells of the map it votes in
81citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

81 citing papers in PubMed.

  1. Article
  2. Article
  3. Living Microbial Drugs.Chemistry (Weinheim an der Bergstrasse, Germany) · 2026
    Review
  4. Article
  5. Review
  6. Visualizing C. difficile During Murine Infection.Methods in molecular biology (Clifton, N.J.) · 2026
    Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Review
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. A TNF-IL-1 circuit controlsbioRxiv : the preprint server for biology · 2023
    Article
  20. Review

21 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Kimberly M DavisHoward Hughes Medical Institute, Sackler School of Graduate Biomedical Science, Tufts University School of Medicine, 150 Harrison Avenue, Boston, MA 02111, USA; Department of Molecular Biology and Microbiology, Sackler School of Graduate Biomedical Science, Tufts University School of Medicine, 150 Harrison Avenue, Boston, MA 02111, USA.
Sina MohammadiHoward Hughes Medical Institute, Sackler School of Graduate Biomedical Science, Tufts University School of Medicine, 150 Harrison Avenue, Boston, MA 02111, USA; Department of Molecular Biology and Microbiology, Sackler School of Graduate Biomedical Science, Tufts University School of Medicine, 150 Harrison Avenue, Boston, MA 02111, USA; Graduate Program in Molecular Microbiology, Sackler School of Graduate Biomedical Science, Tufts University School of Medicine, 150 Harrison Avenue, Boston, MA 02111, USA.
Ralph R IsbergHoward Hughes Medical Institute, Sackler School of Graduate Biomedical Science, Tufts University School of Medicine, 150 Harrison Avenue, Boston, MA 02111, USA; Department of Molecular Biology and Microbiology, Sackler School of Graduate Biomedical Science, Tufts University School of Medicine, 150 Harrison Avenue, Boston, MA 02111, USA. Electronic address: ralph.isberg@tufts.edu.

Funding

TUSM/T-NEMC CENTER FOR NEUROSCIENCE RESEARCH - Imaging CoreP30NS047243 · NINDS · TUFTS UNIVERSITY BOSTON · PI JACKSON, F ROB · 2003 to 2017
$10.0M
Analysis of the interplay between cell adhesion and bacterial protein translocatiR21AI097728 · NIAID · TUFTS UNIVERSITY BOSTON · PI ISBERG, RALPH R. · 2012 to 2013
$454k
Molecular Basis of Yersinia/Host Cell InteractionR56AI023538 · NIAID · TUFTS UNIVERSITY BOSTON · PI ISBERG, RALPH R. · 2011 to 2011
$431k
Mammalian cell collaboration with bacterial type III secretionR56AI110684 · NIAID · TUFTS UNIVERSITY BOSTON · PI ISBERG, RALPH R. · 2014 to 2014
$402k
Howard Hughes Medical InstituteNIAID NIH HHS 2R56AI023538NIAID NIH HHS R21 AI097728NIAID NIH HHS R21AI097728NIAID NIH HHS R56 AI023538NIAID NIH HHS R56 AI110684NINDS NIH HHS P30 NS047243
6 · The paper itself

Abstract

Bacterial pathogens express virulence-specific transcriptional programs that allow tissue colonization. Although phenotypic variation has been noted in the context of antibiotic exposure, no direct evidence exists for heterogeneity in virulence-specific transcriptional programs within tissues. In a mouse model of Yersinia pseudotuberculosis infection, we show that at least three subpopulations of bacteria develop within a single tissue site in response to distinct host signals. Bacteria growing on the exterior of spleen microcolonies responded to soluble signals and induced the nitric oxide (NO)-detoxifying gene, hmp. Hmp effectively eliminated NO diffusion and protected the interior bacterial population from exposure to NO-derived inducing signals. A third subpopulation, constituting the most peripherally localized bacteria, directly contacted neutrophils and transcriptionally upregulated a virulence factor. These studies demonstrate that growth within tissues results in transcriptional specialization within a single focus of microbial replication, facilitating directed pathogen counterattack against the host response.

Indexed as

Host-Pathogen InteractionsImmune EvasionAnimalsDisease Models, AnimalFemaleMice, Inbred BALB CMice, Inbred C57BLNeutrophilsNitric OxideSpleenYersinia pseudotuberculosisYersinia pseudotuberculosis InfectionsNitric Oxide

Identifiers

PMID25500192
PMCPMC4669952

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.