Evidence map›Paper›PMID 25500183›Full record

ArticleJournal of virological methods2015

Rapid and generic identification of influenza A and other respiratory viruses with mass spectrometry.

Joanna A Majchrzykiewicz-Koehorst, Esther Heikens, Hein Trip, Albert G Hulst, Ad L de Jong, Marco C Viveen, Norbert J A Sedee, Jan van der Plas, Frank E J Coenjaerts, Armand Paauw

Open access · hybridAbstract readComparative Study
In one paragraph

Article in Journal of virological methods, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 42 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Review
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  7. Article
  8. MALDI-TOF Mass Spectroscopy Applications in Clinical Microbiology.Advances in pharmacological and pharmaceutical sciences · 2021
    Review
  9. Review
  10. Article
  11. MASS SPECTROMETRY IN VIROLOGICAL SCIENCES.Mass spectrometry reviews · 2020
    Review
  12. Review
  13. Article
  14. Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF-MS) proteomic profiling of cerebrospinal fluid in the diagnosis of enteroviral meningitis: a proof-of-principle study.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2018
    Article
  15. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 2 countries.

Joanna A Majchrzykiewicz-KoehorstNetherlands Organization for Applied Scientific Research TNO, Department of CBRN Protection, Lange Kleiweg 137, 2288 GJ Rijswijk, The Netherlands.
Esther HeikensDepartment of Medical Microbiology, University Medical Center Utrecht, Heidelberglaan 100, 3584 CX Utrecht, The Netherlands.
Hein TripNetherlands Organization for Applied Scientific Research TNO, Department of CBRN Protection, Lange Kleiweg 137, 2288 GJ Rijswijk, The Netherlands.
Albert G HulstNetherlands Organization for Applied Scientific Research TNO, Department of CBRN Protection, Lange Kleiweg 137, 2288 GJ Rijswijk, The Netherlands.
Ad L de JongNetherlands Organization for Applied Scientific Research TNO, Department of CBRN Protection, Lange Kleiweg 137, 2288 GJ Rijswijk, The Netherlands.
Marco C ViveenDepartment of Medical Microbiology, University Medical Center Utrecht, Heidelberglaan 100, 3584 CX Utrecht, The Netherlands.
Norbert J A SedeeNetherlands Organization for Applied Scientific Research TNO, Department of CBRN Protection, Lange Kleiweg 137, 2288 GJ Rijswijk, The Netherlands.
Jan van der PlasExpert Centre Force Health Protection, Health Care Division, Support Command, Ministry of Defence, Korte Molenweg 3, Building 37, 3941 PW Doorn, The Netherlands.
Frank E J CoenjaertsDepartment of Medical Microbiology, University Medical Center Utrecht, Heidelberglaan 100, 3584 CX Utrecht, The Netherlands.
Armand PaauwNetherlands Organization for Applied Scientific Research TNO, Department of CBRN Protection, Lange Kleiweg 137, 2288 GJ Rijswijk, The Netherlands. Electronic address: armand.paauw@tno.nl.
Netherlands Organisation for Applied Scientific Research · NLHeidelberg University · DEMinistry of Defence · NLUniversity Hospital Heidelberg · DEUniversity Medical Center Utrecht · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The rapid identification of existing and emerging respiratory viruses is crucial in combating outbreaks and epidemics. Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) is a rapid and reliable identification method in bacterial diagnostics, but has not been used in virological diagnostics. Mass spectrometry systems have been investigated for the identification of respiratory viruses. However, sample preparation methods were laborious and time-consuming. In this study, a reliable and rapid sample preparation method was developed allowing identification of cultured respiratory viruses. Tenfold serial dilutions of ten cultures influenza A strains, mixed samples of influenza A virus with human metapneumovirus or respiratory syncytial virus, and reconstituted clinical samples were treated with the developed sample preparation method. Subsequently, peptides were subjected to MALDI-TOF MS and liquid chromatography tandem mass spectrometry (LC-MS/MS). The influenza A strains were identified to the subtype level within 3h with MALDI-TOF MS and 6h with LC-MS/MS, excluding the culturing time. The sensitivity of LC-MS/MS was higher compared to MALDI-TOF MS. In addition, LC-MS/MS was able to discriminate between two viruses in mixed samples and was able to identify virus from reconstituted clinical samples. The development of an improved and rapid sample preparation method allowed generic and rapid identification of cultured respiratory viruses by mass spectrometry.

Indexed as

HumansInfluenza A virusInfluenza, HumanMass SpectrometryMetapneumovirusRespiratory Syncytial VirusesRespiratory Tract InfectionsSensitivity and SpecificitySpecimen HandlingTime FactorsVirus DiseasesVirusesIdentificationInfluenza virusLC–MS/MSMALDI-TOF MSMass spectrometryVirological diagnosis

Identifiers

PMID25500183
PMCPMC7113647
OpenAlexW2117256758

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.